| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0527 |
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| Symbol | speD |
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| ID | 4203924 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | + |
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| Start bp | 624388 |
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| End bp | 625203 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 638081409 |
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| Product | S-adenosylmethionine decarboxylase |
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| Protein accession | YP_694981 |
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| Protein GI | 110800832 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1586] S-adenosylmethionine decarboxylase |
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| TIGRFAM ID | [TIGR03331] S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTAGGGT TGAAAGAAAA GATATGCCTT TATGGTTTTA ATAATCTTAC TAAGACACTA
AGTTTTAATA TTTATGATAT TTGTTATGCG AAAACAGAGA GAGAAAAGGA AGACTATATA
AAATATATAG ACGAGCAGTA TAATTCTGAA CGTCTTACAA AGATTCTTTG TGATGTTACA
GAAATGATAG GAGCTCATGT CCTAAATATT TCAAAACAAG ATTATGAACC TCAGGGAGCT
AGTGTAAATG TTCTTATAAC AGAGGAGGCA TTACCAGTAG CACTAATTGA CCCATCATGT
AATAAAGGAG AACTTTCATA TTTGGAGCTT AGAGATAGTG TAGTTGGACA TTTAGATAAA
AGTCATCTTA CAGTTCACAC TTATCCAGAA TTTCATCCAA ATAACGATAT AATTTCTTTT
AGAGTTGATA TAGATGTATC TACTTGTGGA AAAATATCTC CATTAAATGC TCTAGATTAC
TTAATCGGAA GTTTTGATTC AGATGTAATA ACTATTGATT ATAGAGTTAG AGGATTTACT
AGAGATGTTG ATGGTAGAAA ATGCTACATA GACCATGATA TAAAATCTAT TCAAGATTAT
ATAGATGGAG AGACCCTAAA AAAATACGAT GCTATGGATG TTAATGTTTA TCAATCTAAC
ATATTCCATA CAAAGATGAT GCTTAAGGAT ATAGTTTTAA ATAACTATTT ATTTAATTCT
GATCCATATG AATTATCTCC AAATGATAGA AGAGAAATAA GAGATAGAAT ATCAAAAGAG
ATGATTGAAA TATACGGTGG TGTAAATATT TATTAA
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| Protein sequence | MLGLKEKICL YGFNNLTKTL SFNIYDICYA KTEREKEDYI KYIDEQYNSE RLTKILCDVT
EMIGAHVLNI SKQDYEPQGA SVNVLITEEA LPVALIDPSC NKGELSYLEL RDSVVGHLDK
SHLTVHTYPE FHPNNDIISF RVDIDVSTCG KISPLNALDY LIGSFDSDVI TIDYRVRGFT
RDVDGRKCYI DHDIKSIQDY IDGETLKKYD AMDVNVYQSN IFHTKMMLKD IVLNNYLFNS
DPYELSPNDR REIRDRISKE MIEIYGGVNI Y
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