| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0442 |
|---|
| Symbol | |
|---|
| ID | 4200988 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 529113 |
|---|
| End bp | 529793 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 638081326 |
|---|
| Product | putative iron ABC transporter, ATP-binding protein |
|---|
| Protein accession | YP_694899 |
|---|
| Protein GI | 110798924 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTATTG AAATAAAAGA ATTATATTTT AAATATCCTA AGTCTAAGAA TGATATTATA
GATAATTTTA ATATGAGCTT AGAAAAGGGA GAGATATTAT CTATTCTAGG TGAAAGTGGA
AGCGGAAAAA GTACAATACT TAGAATAATT GCTGGTTTAG AAGAGTCATA TAAAGGAGAA
ATAAAAATTG GTGGGAAAAT AGTTTTTTCA GATAATAATT TTGTTGAGCC TGAAAAAAGA
GGAGTTGGAA TGGTCTTTCA AGACTATGCT TTATTTCCTC ATATGACTGT GAAAAAAAAC
ATTCAGTTTG GACTAAAGGG CAAAAATAAG GAAGAAAAAG AAAAAATAGC TATGGATATG
CTTAAACTTG TTAATTTAGT GGAACATAAA GATAAATATC CATATGAATT AAGTGGAGGA
CAGCAGCAAA GGGTAGCCAT AGCGAGAGCT ATAGCACCCA AGCCATCAGT ACTTTTATTA
GATGAACCTT TTTCAAACTT AGATGCAGAT CTTCAAGAAA AAATAAGAGG GGAAATAAAA
GAGATTCTTA TAAAAGCTGG AATTACATCT ATATTTGTAA CTCATGATAG AAGTGATGCA
AAGGCTTTAG CAAATAAATT TATAGAGTTA AAAGAAGGAA AAATAATAAA AGCTGCTTCA
ATTAATGAGT TAAGGTGTTA G
|
|---|
| Protein sequence | MFIEIKELYF KYPKSKNDII DNFNMSLEKG EILSILGESG SGKSTILRII AGLEESYKGE
IKIGGKIVFS DNNFVEPEKR GVGMVFQDYA LFPHMTVKKN IQFGLKGKNK EEKEKIAMDM
LKLVNLVEHK DKYPYELSGG QQQRVAIARA IAPKPSVLLL DEPFSNLDAD LQEKIRGEIK
EILIKAGITS IFVTHDRSDA KALANKFIEL KEGKIIKAAS INELRC
|
|---|
| |