| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0269 |
|---|
| Symbol | |
|---|
| ID | 4203604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 325782 |
|---|
| End bp | 326435 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 638081156 |
|---|
| Product | haloacid dehalogenase, IA family protein |
|---|
| Protein accession | YP_694730 |
|---|
| Protein GI | 110800922 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAGCA ATATAAAAGG TGTAATCTTT GATTTAGATG GAACTTTAGT TGATTCAATG
GGAGTATGGG CTAAAATAGA TTCTGATTAC CTAACTGATC TTGGTCTTGA AGTTCCTAAA
AACCTTAAAG AAGAAATCAC TCATTTAGGC TTCAAAGAAG TTGCTAAATA TTTTAAGAAA
AGATTTAATA TAGCAAGTTC AGAAGAAGAA ATAATGAAAA CTTGGCATGA TATGGCCTAT
GTAGAGTATA AAAATAATAT CAAACTTAAA TCTGGTGCAA GAGAATTTCT TGAGCAATTA
AAAGAATCTA ACATAAAAAT AGGATTAGCT ACTAGTAACT CTTATCCTTT ACTAGAAGTT
TGCTTAAAAT CAAATGATAT CTTTCATTTA TTTGATTCAA TAACAATAAC AGGTGAAGTA
CCTAGAGGAA AGGATTTTCC TGATGTTTAC TTGTTAGCTG CTGAAAGATT AGGCTTAGAG
CCTAAAGAGT GTGCAGTCTT TGAAGATATC TTACCAGCAG TTAAAGGAGC TCTTAGTGCT
GGAATGAAAG TTTTTGCCGT AGAAGAACAT ACTGTTTCTG AAGAAGAAAA ATCACAAATT
AAAGAAATTG TACATGAATA CATAGATTCA TTTAATGATT TACTTGTAAA TTAA
|
|---|
| Protein sequence | MLSNIKGVIF DLDGTLVDSM GVWAKIDSDY LTDLGLEVPK NLKEEITHLG FKEVAKYFKK
RFNIASSEEE IMKTWHDMAY VEYKNNIKLK SGAREFLEQL KESNIKIGLA TSNSYPLLEV
CLKSNDIFHL FDSITITGEV PRGKDFPDVY LLAAERLGLE PKECAVFEDI LPAVKGALSA
GMKVFAVEEH TVSEEEKSQI KEIVHEYIDS FNDLLVN
|
|---|
| |