Gene CNI00980 details

Gene Information

• Locus tag: CNI00980
• ID: 3259713
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006694
• Strand: -
• Start bp: 241710
• End bp: 243678
• Gene Length: 1969 bp
• Protein Length: 513 aa
• GC content: 49%
• IMG OID: 638258583
• Product: RNA polymerase II transcription factor, putative
• Protein accession: XP_572725
• Protein GI: 58271138
• COG category: [Z] Cytoskeleton
• COG ID: [COG5277] Actin and related proteins

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 0.214338
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TCCTTATCTG CAATCCCTCA AGGTATCGCA AAATGGCTCT CTCTCTCAAA GATATGAGGC 
CATTGGTGGT GCACTGCGAC ACGGACTACA TCCGTGCGGG CTTTGCTGTC GGGGAGCTTT 
TTCCTCGACC AAGTGTGGTG AGAGCTTTTC CTCTTCCAAT CGTTGAGTCA TCTCTAAATT 
TCAGAATAGA CCCTTCGCGC TTGTTACGCT ATACCCATAG CATCATCTAA TAAAGCGGCA 
GATGCAAACG GTGACTCACG GGCGGCTGAC GGAGATGTGG ATGTTCCTTC GAAGAGTGGA 
TGGCTTGTTG GTGAAGAATT GGTTGGCGCG CAGAAAGAGA ACAATTGGGA GAGTAGTCTG 
GAATTGAGAT GGCCTTTCAG GCCAAACAAA GTGGCGGATG ACTGGGAAGG ACGCGAATAT 
ATCATGTGCG TCCGTGTATC CGTGTACGCC TGGACGACCA GAGTGAAAGC TGATCGGCAT 
ACAGGTCGCA TCTCTTAGCT CTTCTTGGTA TCAACATCCA AACTAACTCC TCTGCTCTGC 
TCTTAATCCC GCCTCCCTCA CCTCCAACCT TTACACTCTC CACACAAGCT TTATATACTC 
AGTTCGCCTT TGAATCTCTC AATACCCCCA TGTTTTCCAT CCTCCCTGCG CCTCTTTCCG 
GTCTCTACGC TCTTGGAGCG ACTACCGGCA TTATGATCTA CATCGGTCAT GAGGAATCTT 
CAGCATTTGT CATCACCGAC TCTATTGTGA GGTGGGAATG TTCTACGAGT GTACAAATAG 
GTCAGGCCGA TTGTGAATCC CACTTTGAAC AATTGCTTTT GGAAGATGAT CTTTTGGATC 
AGGAGTTAAA GACGGCCACG GGCAACGAGT CATTGGACCT GGAGGAGAAG CGAAAACTGG 
TGAAGGAGGT CGCAAACTTT GTTTGGACGG AATGTACAGG AGATGACATT GAGGTGCCGG 
CGCTTAATGC TAAAGCAGCA ATTGTTATTG GTGCCGCCCA AACATCAGGG GAAGAGGATA 
CGTTCGATGT CGCCAAAAAG TGAGTGGTCG CTCGTGATGA TCCAGCTAAT AAATCAGGCT 
TGTTGGGGAT CCCACACCGG CACCAACAAC TAATTCCCAC AAGAGCAAAA AGCAGCAGGC 
GCAAGCTCTC GCTGCGGCCA ATAAGGCAGC AGCCCAAGCA GCTGCTGACG CTGCTGCGCA 
GGCGGCATTG CCACCTTCTA TTGATGCCAT TGTCGTCACT ATTCCTTCAC TTCCAGAAAA 
AGAGATACAG CTAGGCCCTG TAAGACATCG CATCTGCGAA CCATTGTTCA AGGGCAAGTC 
CATTGGAGGA GACACGTTAT ACGAAGCTGT TGGAAGGGCT GTGGAAAATG ATAGTCTGAG 
CACGGGGGAG AAGCTCGCTA TTTGGGAAGG TGTAGGTGTT ATTGGAGAAG TTGCCAAGAT 
AAAATGTAAG CGCGTCCATC ATCGTCTTGT TATGAGTAGC TAACTACTTC ATAGCCTTTT 
CCCCTGCTCT CGTCACCTAT TTATCCCCTT ACTTACTTTC ATCCTCTGAG CTTCCTTCCG 
ACTGTCAACC CTCAAAAATG CGTCTACTCA GTATACCAGA CTACTTTGCC AACTTCAAAA 
AGACCACAAC GGAGCTGGCG CCATTTTTGG GAGGGACCCT CGTTGCCAAG GTAAGCCGAG 
CTTTCACTGT ATGTCGATGA GGATGTTTAA TGTCCTTCAT TTCTCTAGGT CGCGTTCACG 
GACTCGACAG GCAAGCACAG CGTCTCCAAA GTGGACTATA ATACAAAGGG GCCGGAGGCT 
ATTTATGTGG TCACAAGCGA GGACAGATGA TGTTTGCAGT GAGATAAATG TAGAATTGTA 
AATATCATGA TGACTTCGAA AACACGCATA GGTTTTCGTA TTGCCACCTA GCTCTACATT 
CGTGCCTCTG GATTTAAGTC TATCAGTAAC CCGTGCAGGT GCATTCAAA 

 

Protein sequence

MALSLKDMRP LVVHCDTDYI RAGFAVGELF PRPSVTLRAC YAIPIASSNK AADANGDSRA 
ADGDVDVPSK SGWLVGEELV GAQKENNWES SLELRWPFRP NKVADDWEGR EYIMSHLLAL 
LGINIQTNSS ALLLIPPPSP PTFTLSTQAL YTQFAFESLN TPMFSILPAP LSGLYALGAT 
TGIMIYIGHE ESSAFVITDS IVRWECSTSV QIGQADCESH FEQLLLEDDL LDQELKTATG 
NESLDLEEKR KLVKEVANFV WTECTGDDIE VPALNAKAAI VIGAAQTSGE EDTFDVAKKL 
VGDPTPAPTT NSHKSKKQQA QALAAANKAA AQAAADAAAQ AALPPSIDAI VVTIPSLPEK 
EIQLGPVRHR ICEPLFKGKS IGGDTLYEAV GRAVENDSLS TGEKLAIWEG VGVIGEVAKI 
KSFSPALVTY LSPYLLSSSE LPSDCQPSKM RLLSIPDYFA NFKKTTTELA PFLGGTLVAK 
VAFTDSTGKH SVSKVDYNTK GPEAIYVVTS EDR