Gene CNF01620 details

Gene Information

• Locus tag: CNF01620
• ID: 3258477
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006691
• Strand: +
• Start bp: 478721
• End bp: 480649
• Gene Length: 1929 bp
• Protein Length: 397 aa
• GC content: 52%
• IMG OID: 638257287
• Product: nucleotide-sugar transporter, putative
• Protein accession: XP_571496
• Protein GI: 58268680
• COG category: [G] Carbohydrate transport and metabolism; [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG5070] Nucleotide-sugar transporter
• TIGRFAM ID: [TIGR00803] UDP-galactose transporter

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CAGGAATAAC CATCCCGGCA CCATGTCCAA ACCTTTCGTG CCCACACCCA ACATCTCTCG 
CCCAGCCACT CCCTCCTCCC TCGACTACGG CAAGGACGAG GCCTCTTCCA CCCTCCTGAG 
GGACATGGGC GAGCGGGGAG ACAGAGAGAG GAAAGACAGG GAAGAGAGGG ACAAGAAGGA 
GGCTATGCCG TCGGGACAGG ATCAGGGTGA GTCTGGCCTC TGACTGACTG CGCATGTATG 
GAGGGAGAGA CCAAGCTGGA CACGGCGACT GGACTAGATG TATTGGCGGA TGACATGGGA 
ACGCGCCCTG CCATGCGCTA TATCCCGTCT CGCTGCCACG TATGGCGTGG GCTGAGGATA 
GACAAGTGCT GACCACGCGT CCTAGTCCTC CCCATCCTCT CGTACTGTGC TGCCAGTATC 
ATGATGACCG TCGTCAACAA GGTGAGCCGT TCTGTCTGTT CCGGGTGCTG CGGACTGCGC 
GACGCGTTTC AACGCTGATC ATTACATCCG CAGTACGTCG TGTCCGGCGC GAACTTCACC 
ATGACCTTTT TGCTGTTGGC TATCCAATCG AGTGTCTGTG TTTTGGCCGT CACTACCGTG 
AAGAAGCTGG GTTTCATCTC TTGTTAGTCG ATCGGCATGC TACATGTAAA CAAGTCGGGC 
TGATAGGCTG GGTTCTATCT AGTCCGTGAC TTTGACAAGA ATGACGCCAA GGCCTGGTGG 
CCCATCTCTA CATTGTTGGT GGCTGTCATC TACACTGGTT CAAAGGCTTT GGTAAGTTTA 
GTGGGGTTTT GAGTTGCAAT CGATGCTAAC AAAGATGTAG CAATTCTTGT CTATCCCCGT 
CTACACGTGA GCCGGCCGAC CATCTTGAAA ATGTGGACTG GACTGATCTC GTTTGTAGTA 
TCTTCAAGAA CTTGACCATT ATCCTCATTG TCAGTATCGA CACCATGGTT CAAGCCTTAA 
AAGCTAATCT CTTTTATAGG CCTACGGAGA AGTGTTTATG TTCAACGGTG CCGTCAGTGG 
TCTCACACTC TGTTCATTTG CTCTCATGGT GAGTACATTG AGTAAGGTCT AGGCATGTCG 
CTGATAATAT CCCAGGTTGG CTCTTCCATC ATCGCCGCCT GGTCCGATAT CACTTCTGTG 
TGGAACAAGG AGCCTGAGCT TGACCCTATT ACCGGTCTCG AGATTACTGT TGGCCCCGTA 
TCTACGATTG GTGGCCTTAA TGCTGGTTAC ATTTGGATGG CGCTCAACTG TTTCGTCTCT 
GCTGCCTACG TACGTACACT GTTTTGGAAT GATGGGCATA GCTGACAATA TATTTGACAA 
TCCAACAGGT TTTGTTCATG CGAAAGCGAA TCAAGGTCAC TGGCTTCAAG GACTGGGACT 
CTATGTATTA CAACAACCTT CTCTCCATCC CCATCCTTGT CGTCTTCTCT CTTGTCATCG 
AAGACTGGGG TTCTGAATCT CTTGCCCTCA ACTTCCCTGC TTCCAACCGT GTGCTCCTTC 
TCTCCGCCAT GGCCTTTTCC GGCGCCGCTG CCGTCTTCAT TTCATACTCT ACCGCCTGGT 
GTGTTCGTAT CACTGGTTCC ACAACATACA GTATGGTCGG AGCTTTGAAC AAGTTGCCTG 
TCGCCGCGAG CGGTATCTTG TTCTTTGGTG ACCCCGCCAA CTTTGGTAAC ATCTCGGCCA 
TCGCTGTTGG TGGTGTCGCT GGTGTGGTGT ACGCTGTGGC CAAGACTAAC CAGGCAAAGG 
TAGAGAAGGC TAGGCAAGCA AGGGCCGCGG GTGGTAGGCC ATGAGGTGCT TTTGAAAAAC 
AGGGGACCAG AAGTACGTTT GGTGATGATT CACGGTGTAT ACACATTGTG CAAAACGGGA 
TTATTTAGAG AGAGCTCTAC AGAGAGCGCT TGTTGCTTTG ACCATGCATA GATAACAATC 
CGTTTGATA 

 

Protein sequence

MSKPFVPTPN ISRPATPSSL DYGKDEASST LLRDMGERGD RERKDREERD KKEAMPSGQD 
QVLPILSYCA ASIMMTVVNK YVVSGANFTM TFLLLAIQSS VCVLAVTTVK KLGFISFRDF 
DKNDAKAWWP ISTLLVAVIY TGSKALQFLS IPVYTIFKNL TIILIAYGEV FMFNGAVSGL 
TLCSFALMVG SSIIAAWSDI TSVWNKEPEL DPITGLEITV GPVSTIGGLN AGYIWMALNC 
FVSAAYVLFM RKRIKVTGFK DWDSMYYNNL LSIPILVVFS LVIEDWGSES LALNFPASNR 
VLLLSAMAFS GAAAVFISYS TAWCVRITGS TTYSMVGALN KLPVAASGIL FFGDPANFGN 
ISAIAVGGVA GVVYAVAKTN QAKVEKARQA RAAGGRP