| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNE04510 |
|---|
| Symbol | |
|---|
| ID | 3257891 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006687 |
|---|
| Strand | - |
|---|
| Start bp | 1262894 |
|---|
| End bp | 1264519 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | |
|---|
| GC content | 48% |
|---|
| IMG OID | 638257035 |
|---|
| Product | isoprenoid biosynthesis-related protein, putative |
|---|
| Protein accession | XP_571137 |
|---|
| Protein GI | 58267962 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CTTTCAAAAC CCCAATTTTC CCTCTATAAC CCTCCAGAAT GTCCTCGCTC AACCCCGAAA
TTGACGGCCA TTCCTACAAC CGCCCGGACG CTGGAGCTCA GACTCCCGTT GACGCCAAGG
CTGCGCGAAG GGCCCGTTTC GAAAAGGTCT TTGACCAGAT TGCCGAGGAG CTTTTGACGT
ATGTCAAGGG TGAGGGTATG CCCAAGGATG CTGTAGAGTG GTACCAAAAG GTGTGTAGCT
ACCTAGCGTC ATGATAGGTC GAGCAAATCC TTTTGCCAGA GAACACCTAG GTACAAAGCA
GCTTGTAAAC AAAAACTGAC ATTGCCATAG GTACTTTACC ACAACACTCC CGGTGGTATG
TCTCAGTTTT AAATTTAGTG GCACAAAAAT CACAATTAAC GTTCCGCAAT ATAGGCAAGC
TCAACCGTGG TATGTCCGTC GTCGACACTG TCGAAATCCT CAAGGGCCGA GAACTATCTG
AGGAAGAATA CACCAATGCC GCTATCCTTG GATGGTGTGT AGAGCTCGTA AGTGAACATA
TGTCTACTTC AGAAAATAAT CCTGACTCCT GTGATTAGCT CCAAGCTTAT TTCCTTGTCG
CCGATGACAT TATGGACCAG AGCGTTACCC GTCGAGGACA GCCCTGTTGG TACCGAGTGG
TCAGTTGCTT TGCTATCTAT ATTTGCACCA ACGGACTCAT AGAGCTACCC AGCCTAACGT
CGGTAACATT GCTATTAACG ACGCTTTCAT GCTTGAAGCC GCCATCTATT ACCTCCTCAA
GAAACACTTC AGGAGCCAAA AGTACTATGT CGACTTGATG GAACTCTTCC TAGAGACTAC
CTTCCAAACT GAGCTCGGCC AGTTGGTCGA CCTCATTACC GCGCCTGAAG ACCACGTCGA
CTTGAACAAA TTCTCTCTCG AGAAGTAAAT TAATATTTCT CCCAGTGATG TGCCGATTCG
CTGACTTTTT GGTCGCAGGC ACCACCTCAT TGTCGTTTAC AAGACTGCTT TCTACTCTTT
CTACCTCCCC GTCGCTCTTG CCATGCACAT GGTAAGCATG TCTATTATCT GGAAGAAATA
TCAGAGTTTA CAGCAAAAAT CAGTCCGGTG TTGAGGACAA GGCTGCTTTC GATCTCGCCC
TCAAAATCCT TCTCCCCCTC GGCGAGTACT TCCAGGTTCA GGACGACTAT CTCGATTGCT
ACGGCAAGCC CGAGCACATT GGCAAGATTG GTACTGATAT CCTCGTAAGC CAAAACCTTC
TGGGCACATA TCTAGACAGA TCCTTACCTT GTATTGTAGG ACAACAAGTG CTCTTGGAAC
GTCAACACCG CCCTCGCTCA CGCTACCCCT GAACAGCGTA AGATCCTCGA TGAAAACTAT
GGCCGAAAGG ACAGCACCTG CGAAGCTCGC GTCAAGGAGC TTTTCTCTCA AACACCTATC
TCTATCCCTG AGCGATTCGA AAAGTACGAG AAGGAAAGCT ACGAGAAGAT CAATGCTTTG
ATCGAGCAAG TCGACGAGGA AAAAACTGGT TTGAAGAAGG AAGTGTTCAG GAGTTTTTTG
GCCAAGGTGT ACAAGAGGTC AAAGTAGAGT GCATCCAGAC ATGTATCTTG GACATTTTTA
GGGCTA
|
|---|
| Protein sequence | MSSLNPEIDG HSYNRPDAGA QTPVDAKAAR RARFEKVFDQ IAEELLTYVK GEGMPKDAVE
WYQKVLYHNT PGGKLNRGMS VVDTVEILKG RELSEEEYTN AAILGWCVEL LQAYFLVADD
IMDQSVTRRG QPCWYRVPNV GNIAINDAFM LEAAIYYLLK KHFRSQKYYV DLMELFLETT
FQTELGQLVD LITAPEDHVD LNKFSLEKHH LIVVYKTAFY SFYLPVALAM HMSGVEDKAA
FDLALKILLP LGEYFQVQDD YLDCYGKPEH IGKIGTDILD NKCSWNVNTA LAHATPEQRK
ILDENYGRKD STCEARVKEL FSQTPISIPE RFEKYEKESY EKINALIEQV DEEKTGLKKE
VFRSFLAKVY KRSK
|
|---|
| |