Gene CNB04090 details

Gene Information

• Locus tag: CNB04090
• ID: 3255582
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006684
• Strand: +
• Start bp: 1202474
• End bp: 1204543
• Gene Length: 2070 bp
• Protein Length: 449 aa
• GC content: 50%
• IMG OID: 638255054
• Product: isocitrate dehydrogenase (NADP+), putative
• Protein accession: XP_569233
• Protein GI: 58264154
• COG category: [C] Energy production and conversion
• COG ID: [COG0538] Isocitrate dehydrogenases
• TIGRFAM ID: [TIGR00127] isocitrate dehydrogenase, NADP-dependent, eukaryotic type

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.00968554
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TCTTGTAAAC ATCCACAACT GCCCTCTCTT TCCCCGTCTC GTTACTTTGT GTCTCTCTCC 
CAAAAATGGT AAGCACACGT CCATTCCATT CCCCCGCATC CCACCGGCTT TCTTCGGCTC 
TCAAGTCACC GCAACCTTGA CGGGACCAGC CACCCCGTGT TCGCACCACT CTTTCTTCGA 
CCGGTTACGG CCGGCACGCC CCTTTGCTAT GCTTTCCACA CGCATGCTCT CCACCTCAAA 
TATCCTCTCT GCCAATCAAC TGATATTATA TATAACGCGT CATGTTCCCA CAGCTCGCTC 
GAAGCACCAC TGCCTTTACG CGCTCATCTC TTCTCCGATC AACTAGACCT TTAGCATTCG 
CAATGGCTTC ACGCAACTAT GCTTCCACCC CTGCCGGCAT CGACAGGATC AAGGTCAAGA 
ACCCCGTGGT TGAGATTGAC GGTGATGAGA TGACAAGGAT CATCTGGAAG AAGATCAGGG 
AGGAGGTGTG TATATCTCTG CCTTTTTTTA CATGACGATA CACGGGCTGA CCAGGTGGCA 
GCTTATCTTG CCCTACGTTG ACGTTGACCT CAAGTACTAC GACTTGGGAA TGGAGAGCCG 
AGATGCTGTA TGTTTTGTTT TATTTTTTTG GCGTACATAC CCCCTTCCTA TGCCTCTCTG 
ATATGTGGCA TAGACCAACG ACCAAATCAC TATCGACTCT GCCGAAGCTA TCAAAAAGTA 
CTCTGTCGGT GTCAAGTGCG CTACCATCAC CCCTGACGAG GCTCGAGTCA AGGAATTCAA 
ATTGAAGGAA ATGTGGCGAA GCCCCAACGG AACTGTGAGT CCAATCCCTG AACATCTTTT 
TTTTTTTCCT TCTTGTTTTC GTTCTGACGC CTCTGGTAAG ATCCGAAACA TCCTCGGAGG 
AACCGTCTTC CGAGAGCCCA TCATTCTCGA CAAGATCCCC AAGCCCGTCC CCGGATGGAC 
CAAGCCCATC TGTATCGGTC GACATGCTTT CGGTGACCAA TACCGATCCA CCGACTTTAT 
CGCCCCCGGA CCCGGAAAGC TCACCCTCAC TTACACCCCC GCTGAAGGAG GTGCCCCCAC 
CGAGCTCAAC GTCTACGACT TCAAGGGCAA GGGTGTCGCC TTGGCCATGT ATAACACCGA 
CGAAAGCATT TACGGTTTCG CCCACGCGAG CTTCAAGATG GCTTTAAGCA AGAAGATGCC 
CTTGTTCATG TCTACCAAGA AGTAAGTTTG GATACGTGGA CTTGTCACGA CTCCTTTATT 
AACGAAAATG CGCAGCACCA TCTTGAAGAA GTACGATGGC CGATTCAAGG ACATTTTCCA 
AGAGGTCTAC GAATCTACGT ACAAGGCCGA GTTTGAGAAG CTCGGTGTCT ATTATGAGCA 
TCGCCTCATC GACGACATGG TTGCTCAGGC CATCAAGTCT TCTGGTGGTT TCGTTTGGGC 
GTGCAAGAAC TACGACGGTG ATGTCATGGT ATGTCCCTTT TTCCAATCCC TTTTTTTCTT 
TTCTTTTTTT TGGAATCACG TCTGATAAAG ATACAGAGCG ACATTCTCGC CCAGGGTTTC 
GGTTCTCTCG GTATGATGAC TTCCGAGCTC ATCACCCCAG ACGGCAAGAC CATGGAATCT 
GAAGCTGCCC ACGGTACCGT CACCCGACAC TACCGACAAT ACCAAGCCGG TCACGAAACC 
TCTACCAACC CTGTTGCCTC CATCTTTGCC TGGACCCGAG GGCTTGCCTT CCGAGCCAAG 
TTGGACGAGA CCCCCGCGCT CGAGGCGTTC GCCAAGGACT TGGAAGCTGC CTGTGTTGAA 
GTCATCGACA AGGACGGTAT CATGACCAAG GATTTGGCTT TGGCGATGAA GGGTAAGGAC 
ATGACTAGGG ATGACTGGGT CACCACCGAC GTCTACATGA AGAAGGTCAA CGAGAGGTTG 
GTCGAAAAGC TCAAGGCGAG GAGCGCGTAA GAAGCCAAAA CATGGAAAAA AAAAGGGCAA 
AAAAGTTGTA GAGATCATTC AACGTTCATA GTAGAAAGGG ATTGCAGACT TATTCAACAG 
GGTCACAGGA TGCATATTTA TATTTATATG 

 

Protein sequence

MLARSTTAFT RSSLLRSTRP LAFAMASRNY ASTPAGIDRI KVKNPVVEID GDEMTRIIWK 
KIREELILPY VDVDLKYYDL GMESRDATND QITIDSAEAI KKYSVGVKCA TITPDEARVK 
EFKLKEMWRS PNGTIRNILG GTVFREPIIL DKIPKPVPGW TKPICIGRHA FGDQYRSTDF 
IAPGPGKLTL TYTPAEGGAP TELNVYDFKG KGVALAMYNT DESIYGFAHA SFKMALSKKM 
PLFMSTKNTI LKKYDGRFKD IFQEVYESTY KAEFEKLGVY YEHRLIDDMV AQAIKSSGGF 
VWACKNYDGD VMSDILAQGF GSLGMMTSEL ITPDGKTMES EAAHGTVTRH YRQYQAGHET 
STNPVASIFA WTRGLAFRAK LDETPALEAF AKDLEAACVE VIDKDGIMTK DLALAMKGKD 
MTRDDWVTTD VYMKKVNERL VEKLKARSA