| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNA00880 |
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| Symbol | |
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| ID | 3253456 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_006670 |
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| Strand | - |
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| Start bp | 246774 |
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| End bp | 249404 |
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| Gene Length | 2631 bp |
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| Protein Length | 567 aa |
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| Translation table | |
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| GC content | 48% |
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| IMG OID | 638252420 |
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| Product | ITR1, putative |
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| Protein accession | XP_566515 |
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| Protein GI | 58258205 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00879] MFS transporter, sugar porter (SP) family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0105126 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | CTCCTATGGA CCCAGATTGA GCCGCAATGT CAGCTGGACC AGCCCAACCC AACATCTACG
CACCCATCCG CACATCTCAC AGCGGCTATC CATCCCCGAC ACACTCTGGT TCCTCCACGC
CCGCGTCGCT GGAATTCTCC GATGGTCGAT TGCCGGAAAG CAATGTCGAG AGAGATATGA
GCAAGGTCGC GGAGAGGGTC GCCCTTCTGG GCGAGGTGGA TGACGGAGCA GTCATCGTGG
AAGGCGAAGA TAAGTAAGTT GATTTCCTGT TATGTCGTGC GGGGGGTCGG AAGCTACGCG
AGGTTTGACC GAGGCCACGG GGCAAACATT TTATCAATTC TTAAAACCAT AACAGCCTCA
CCCTCTGGCG AGGGCTAGAT GACCTTCATA GACAGATTTG ATAAATGTGA GGAGCGGTGG
AATACTTGGC ATCACATTTC CTATACGAAG CCCTACCGAG CCAACCTAGG TCGTGGACTT
ATAGGAGCTG AGTACAGTCG CGACCACCCA TTCATTCTCG GATCCATTTG CGGTAGAATC
CGCTTTGCGA GTTCGACCTT TCAAGATTTG GGGACCGCTT ACCTCTGAAT GAAGCTAATG
ATCAATGTGG TAGAATAACC AAGTTCGTGT GGACGCTGGT GTTGGCTGCT GCGATCTCAG
GCTTACTATT CGGTCAGTAT ATCTTATGCG TGGCGAGGTC TAAGAAGGGA TGGCTGATGT
GGTAAGGAAC ATCAGGCTAT GACACGGCCG CCATCTCCGG TATGCTGGTC ATTATCAAGG
ACGATCTTGG CACAATATTA TCAAGCTGGC AAAAAGAAGC GATCACCTCT GCCACAACTC
TCGGTGCATT ATTAGGAGGT CTTGCCGCAG GTTGCATTTC AGACTTTACA GGTCGAAGGC
TCGTTATTGT GTTTGCCAAC GTCGCTTTTA TCGGTGGTTC TATCTGTCAA GCAGCTTGCC
ACACTGTGGC AGTGATGATC GCCGGTCGAT TCATCGTTGG ACTTGGTGTC GGTCTCGCGA
GCTGTATTGT GCCATTGTAT ATTGGAGAGC TGGCGCCTAC CATGATTAGA GGACGATTGG
TTACCATTAA CTGTGTCGCT ATCACTTTGG GTCAAGTCGT CGCTTACGGT ACGCCTCGCG
TATTCTCTCA AGGGGTGGAA GTCTGACCAT GAACATAGCT ATTGGTGCCA GTTTCCAAAA
TGCGCATAAT GGTTGGCGAT GGATTGTGGG ACTTGGCGCG ATGCCGTCGT TTGTTCAACT
CGCTTCAATC GGTTTCCTTC CCGAATCACG TATGTTCCCT TTCGGAGCGC TTTTTATTAT
GAACTAACTC TAGGAAGCCC GTATTCTTCT GCTCCGCTCT GACGTTGCTG GCGCACGAGC
TATTACTGCC AAGATCTACC CTCTCGCAAA AGTCGAGCAG GTTGACAGAA AAGTCGAGAT
CATGAAAGCT GCTGTCGATC AGAGTATCGA GTATAACGCC AATTCTACAT GGTTTGAGAG
GCTCAAGAGT TTGGTTATGG TTGGTACCAA TCGACGAGCG CTAAGTACGT CTTCATTCAT
TTCGAAATGC ATGTGTCAGT AAGAGCTGAT TGAGGATTAG TCATCGGATG TGGATTGCAA
GCAGCCCAAC AACTATGCGG TTTCAACACT CTGATGTACT ATTCTGCAAC CATATTCGCC
ATGCTTGGAT TCAAGAATGC TACAGCCGTC GGATTGATCG TCGCTACTGT CAACGTTTTG
TTCACCCTCG TCGCTCTCAA GGCGAGTTTC TTCATAATGG TCCAAGGACG TCAGCTAACT
TCCTTTCCTT TAATAAGATT GTCGACCCTG TGGGACGACG AAGAACTATG CTTTTCACCC
TTCCTATTAT GACCCTCGCC CTCGTCCTCG CGGCTATCTT CTTCTACTGT AAGCACCTTC
CTCCTCTACA ACCTGTGCTC CACCCTTACT GATAATTCTT CCCTTCAGAC CTCACACTCT
CCACCAACGG CATCCTCATC GAGGACCACG ACTACCCCCG CTCTTTATCC ATCCCCGTTC
TCCTTTCCAT GCTCCTCTAT GTCGCGGGCT ACGCAACCGG TCTCGGTAAC ATCCCCTGGC
AACAGGGAGA GCTCTTCCGA CTCGAAGTAA GAGGAATCGG TACGAGTATC TGTACGGCCG
TGAATTGGAG TTGTAATATG TTGATTGCGA GCACGTTTTT GAGTTTGATG GATGCTGCAA
CGCCAAGTGG GGCGTTTGGG ATTTATGCGG GGTTTTGTGT GATTGGATGG TTGTTTTGTT
GGATGCTGTA TCCTGAGACT TCCGGGTGAG TTTTTCCTTT CCGCGATTTT ACAGTTCAAG
TTCAGGCAAG TTAAAGTTGC TAATTGTGAT TGATAGACTT TCATTGGAAG AAGTATACTT
TGTTTTCGAA GAAGGGTTTG GGATTGAAAA ATCTCAGCAG CTGCGCAAGC AGAAGCTGGA
AGAATCTGCC AAGCTCAAAG CCATATTTGA GTAATCAGAT TTTCAAATTG TCATCTGTTC
GACAAGCTGG ACTTTCCTTT TCGAATTGAT ATTTGAGTGC AAAAGACATT TCTTCTTCAT
ACTCCCTTAT TTTATCGTCA ATTCGGTTTT TTATGATTTA AATTTTCCTT T
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| Protein sequence | MSAGPAQPNI YAPIRTSHSG YPSPTHSGSS TPASLEFSDG RLPESNVERD MSKVAERVAL
LGEVDDGAVI VEGEDKITKF VWTLVLAAAI SGLLFGYDTA AISGMLVIIK DDLGTILSSW
QKEAITSATT LGALLGGLAA GCISDFTGRR LVIVFANVAF IGGSICQAAC HTVAVMIAGR
FIVGLGVGLA SCIVPLYIGE LAPTMIRGRL VTINCVAITL GQVVAYAIGA SFQNAHNGWR
WIVGLGAMPS FVQLASIGFL PESPRILLLR SDVAGARAIT AKIYPLAKVE QVDRKVEIMK
AAVDQSIEYN ANSTWFERLK SLVMVGTNRR ALIIGCGLQA AQQLCGFNTL MYYSATIFAM
LGFKNATAVG LIVATVNVLF TLVALKIVDP VGRRRTMLFT LPIMTLALVL AAIFFYYLTL
STNGILIEDH DYPRSLSIPV LLSMLLYVAG YATGLGNIPW QQGELFRLEV RGIGTSICTA
VNWSCNMLIA STFLSLMDAA TPSGAFGIYA GFCVIGWLFC WMLYPETSGL SLEEVYFVFE
EGFGIEKSQQ LRKQKLEESA KLKAIFE
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