| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3169 |
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| Symbol | rpoB |
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| ID | 4186658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 3607140 |
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| End bp | 3611015 |
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| Gene Length | 3876 bp |
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| Protein Length | 1291 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638073157 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_679751 |
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| Protein GI | 110639542 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCAACTA ACAATACTCA AAATCTTAGA AAGAGCTTTG CAAAAACTAG AAGTACGGTT
GAATACCCAG ATTTCCTAGA TATCCAAGTT AGATCTTTCA AAGATTTTTT TCAGATTGAT
ACTCCTGCTG AAAATAGATT CAAAGAGGGA CTTTATAAAG TTTTTGCAGA AAATTTCCCA
ATCTCTGACT CCCGTGATAA TTTTATTTTG GACTTCATCG ATTACAACAT CGATACGCCG
AAATATAATG TTGACGAGTG TATTGACCGC GGATTAACTT ACGCTGTACC TCTTAAAGCA
AAACTTCGTC TTACATGTAA CGATAAGGAC AACGAAGACT TCCAGACAAT CGAACAGGAA
GTGTTCCTTG GAAATATTCC ATACATGACT GAACGTGGAT CTTTCGTTAT CAATGGCGCT
GAGCGGGTAA TCGTATCACA GTTGCACCGT TCTCCGGGTG TATTCTTTGC TCAAAGCAAG
CACACCAACG GAACTAAACT TTACTCCGCA AGAGTAATTC CTTTCAAAGG ATCCTGGATC
GAATTTGCAA CAGACGTGAA CAACGTAATG TTTGCATACA TTGATCGTAA AAAGAAATTC
CCTGTAACTA CGCTGTTAAG AGCAATCGGA TACGGTAGTG ATAAAGATAT ATTAGACTTA
TTCGGTTTAT CTGAAGAAGT TGAAGCTACT AAAGCTAATA TTAAAAAAGC TATAGGTAGA
AAATTGGCTG CCCGCGTACT TCGTACATGG ACAGAAGATT TCGTAGATGA AGATACTGGT
GAAGTTGTTT CAATCGACCG TAACGAAGTT CTTTTAGAAC GTGATTCGAT CATTAAAGAA
GAAGACATCA ACATCATTGT TGAATCTGGT TCTAAATCAA TTATTCTTCA CCGTGAAGAC
GTAAATATTG CTGATTACAC AATCATCTAT AACACGCTTC AGAAGGATAA CTCAAACTCT
GAAAAAGAAG CGGTTGAGCA AATCTACCGT CAATTAAGAA ATACAGACGC TCCTGATGAA
CAGACAGCAC GTGATATCAT TCACAACCTG TTCTTCAGTG ATAAACGTTA TGATCTTGGT
GAAGTTGGTC GTTACAGAAT TAATAAAAAA TTAGGTAGCG GCATGGGTAG TGAGGTTAAA
GTCCTTACAA AAGAAGACAT CATCAACATT GTAAAATATC TGATCGGTCT TATCAACTCA
CGTGCTGTTG TTGATGATAT TGATCACTTG AGCAACCGTC GTGTTCGTAC GATGGGTGAA
CAGCTTTACA GCCAGTTCAG CGTTGGTCTT GCACGTATGG CAAGAACAAT CAAAGAACGT
ATGAATGTTC GTGACAACGA AGATTTCAAA CCTGTAGATC TGATCAATGC GCGTACACTT
TCTTCAGTAA TCAACTCATT CTTCGGAACA AACCAGTTAT CTCAATTCAT GGATCAAACC
AATCCATTGG CTGAGATTAC GCACAAACGC CGTATGTCGG CTCTTGGGCC AGGTGGTTTA
TCCAGAGAAC GTGCCGGTTT CGAGGTTCGG GATGTTCACT ATACGCACTA CGGTCGTTTG
TGTACAATCG AAACTCCTGA AGGTCCAAAC ATTGGTTTGA TTTCCTCTCT TTGCGTTCAC
GCAAAAGTAA ATAGCATGGG TTTCATCGAA ACTCCTTACC GTAAAGTTAT TGATGGTATC
GTTGACGTTA AAAACCAACC GGTATTCTTA ACTGCGGAAG AAGAAGACGG TGCACACATC
GCACAGGCAA ACGCTATGTA CGACGATAAT GGTAACTTCA TTAGCGATCG TATCAAAGCC
AGATATGAAG GTGACTTCCC GGTTATTGCT CCGGATAAAG TTGACTTAAT TGATATTGCA
ACAAACCAGA TTGTTTCTGT TGCCGCATCT CTTATTCCTT TCCTTGAGCA TGATGATGCC
AACCGTGCAT TGATGGGATC AAACATGCAG CGCCAGGCAG TTCCTTTATT AAGACCGGAA
GCACCAATTG TTGGTACTGG TCTTGAAAGA CGCGTGGCAA TGGATTCAAG AACATTATTG
ATTGCAGAAG CAGATGGTGT TGTTGAGTTT GTAGATGCAA ACGAAATCAA AATGCGTTAC
GATCTTACTG ATGAAGATCG TTTAGTAAGT TTTGATTCAG ATATAATCAC ATATAGCTTA
ATTAAATTCA GAAGAACCAA CCAGGATACC TGTATCAATC TTAAACCGGT TATTCAACAT
GGTGAAAGAG TTAAAAAAGG TCAGGTATTG TGTGAAGGGT ATGCAACGGA TAAAGGTGAA
TTAGCATTAG GTAGAAACTT AATGGTAGCG TTCATGCCTT GGCAAGGGTA TAACTTCGAA
GATGCGATTG TTATCAGTGA GAAAGTAGTA CGTGATGATA TCTTTACTTC AATTCACATC
GAAGAATTTG AATTAGAAGT TAGAGATACA AAACGTGGTG AAGAAGAATT AACTTCTGAG
ATTCCAAACG TAAGTGAAGA AGCCGTTAAA AATCTTGATG AAAACGGTAT TATTCGTACG
GGTGCTGAAA TTAAAGAAGG TGATATATTA ATCGGTAAAA TCACACCTAA AGGTGAATCA
GATCCTACAC CGGAAGAGAA ATTGCTTCGC GCGATCTTCG GTGATAAAGC AGGTGATGTT
AAGGATGCTT CTATGAAAGC GCCTCCATCT TTACGTGGTG TTGTTATTGA TACGAAATTG
TTCTCCCGTC CTAAAAAGGA TAAAGATTTG CGTATAAAAT CTAAGAAGCA AGTTGAGACA
ATAAAAGGTA AGTACAGCAA AGATCTTTTA GCTTTAAGAG AGCAAATGAT CGAAAAGCTT
GCTGCTTTAT TGGATGGACA GACTTCTCAA GGTGTTAAGC ATAAATTCGG AGATGAAGTA
ATTTCTAAAG GTGTTAAATT CTCCCGTAAA AATATTGAGG CGAATGTCTT CCCGGACAAA
AACCCATACA GAGATGAGAG CAATTATAAC GTTCAGGAAG AAGCGAACTT ATTAGGTGAT
TTGATTATTG ATAATTGGAC ATCTGATAAA AAAATTAACG AAAACGTTTT ACGTTTAGTT
AAAAACTATT TGACAAAACG TAATGAAACT GCTGGTAAAT TCAAACGCGA GCGCTTCACA
TTAGAAGTTG GGGATGAATT ACCTGCTGGT ATTGTTCAAT TAGCAAAAGT TTACATTGCT
AAGAAACGTA AGTTGAAAGT TGGTGATAAG ATGGCTGGTC GTCACGGTAA CAAAGGGGTT
GTTGCCCGTA TTGTCCGTGA TGAAGATATG CCATTCTTAG AAGACGGAAC TCCGGTTGAT
ATCGTACTTA ACCCGCTTGG GGTACCTTCG CGTATGAACA TCGGTCAGAT CTATGAAACA
TTATTAGGTC TTGCCGGCAA GAAATTAGGT AGAAAATATG CAACTCCAAT CTTCGATGGT
GCTTCTGAAG AAGAAGTAAT CAACGAATTA AGAGATGCAG GTTTACCTAC AATCGGTCGT
ACGAAACTGG TAGATGGTTT ATCCGGTAAT CCTTTTGACC AACCAGTTAC GGTAGGTGTT
ATTTATATGA TGAAACTTGG TCACTTGGTT GATGATAAGA TGCACGCTCG TTCTATCGGG
CCATACTCTC TTATTACACA ACAACCGTTG GGTGGTAAAG CTCAATTCGG TGGTCAGCGT
TTTGGTGAAA TGGAGGTTTG GGCACTTGAA GCATTCGGTG CAGCAAACAT TCTTCAGGAA
ATCCTTACAG TGAAATCTGA TGATGTTGTA GGTCGTGCTA AAACATACGA ATGTATTGTT
AAAGGCGAAA ACCTACCGAG ACCAAACATC CCGGAATCAT TCAATGTATT GGTGCATGAA
CTTAGAGGTT TAGCTCTTGA GATCACACTT CACTAA
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| Protein sequence | MATNNTQNLR KSFAKTRSTV EYPDFLDIQV RSFKDFFQID TPAENRFKEG LYKVFAENFP
ISDSRDNFIL DFIDYNIDTP KYNVDECIDR GLTYAVPLKA KLRLTCNDKD NEDFQTIEQE
VFLGNIPYMT ERGSFVINGA ERVIVSQLHR SPGVFFAQSK HTNGTKLYSA RVIPFKGSWI
EFATDVNNVM FAYIDRKKKF PVTTLLRAIG YGSDKDILDL FGLSEEVEAT KANIKKAIGR
KLAARVLRTW TEDFVDEDTG EVVSIDRNEV LLERDSIIKE EDINIIVESG SKSIILHRED
VNIADYTIIY NTLQKDNSNS EKEAVEQIYR QLRNTDAPDE QTARDIIHNL FFSDKRYDLG
EVGRYRINKK LGSGMGSEVK VLTKEDIINI VKYLIGLINS RAVVDDIDHL SNRRVRTMGE
QLYSQFSVGL ARMARTIKER MNVRDNEDFK PVDLINARTL SSVINSFFGT NQLSQFMDQT
NPLAEITHKR RMSALGPGGL SRERAGFEVR DVHYTHYGRL CTIETPEGPN IGLISSLCVH
AKVNSMGFIE TPYRKVIDGI VDVKNQPVFL TAEEEDGAHI AQANAMYDDN GNFISDRIKA
RYEGDFPVIA PDKVDLIDIA TNQIVSVAAS LIPFLEHDDA NRALMGSNMQ RQAVPLLRPE
APIVGTGLER RVAMDSRTLL IAEADGVVEF VDANEIKMRY DLTDEDRLVS FDSDIITYSL
IKFRRTNQDT CINLKPVIQH GERVKKGQVL CEGYATDKGE LALGRNLMVA FMPWQGYNFE
DAIVISEKVV RDDIFTSIHI EEFELEVRDT KRGEEELTSE IPNVSEEAVK NLDENGIIRT
GAEIKEGDIL IGKITPKGES DPTPEEKLLR AIFGDKAGDV KDASMKAPPS LRGVVIDTKL
FSRPKKDKDL RIKSKKQVET IKGKYSKDLL ALREQMIEKL AALLDGQTSQ GVKHKFGDEV
ISKGVKFSRK NIEANVFPDK NPYRDESNYN VQEEANLLGD LIIDNWTSDK KINENVLRLV
KNYLTKRNET AGKFKRERFT LEVGDELPAG IVQLAKVYIA KKRKLKVGDK MAGRHGNKGV
VARIVRDEDM PFLEDGTPVD IVLNPLGVPS RMNIGQIYET LLGLAGKKLG RKYATPIFDG
ASEEEVINEL RDAGLPTIGR TKLVDGLSGN PFDQPVTVGV IYMMKLGHLV DDKMHARSIG
PYSLITQQPL GGKAQFGGQR FGEMEVWALE AFGAANILQE ILTVKSDDVV GRAKTYECIV
KGENLPRPNI PESFNVLVHE LRGLALEITL H
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