Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_1951 |
Symbol | rpsA |
ID | 4186440 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 2278343 |
End bp | 2280163 |
Gene Length | 1821 bp |
Protein Length | 606 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 638071954 |
Product | 30S ribosomal protein S1 |
Protein accession | YP_678559 |
Protein GI | 110638350 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0539] Ribosomal protein S1 |
TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.275526 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0589831 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTACAATA GGGTGAATAT TATGCTTACT CCAAAACCAG AAGATTTTAA CTGGGACTTA GTTGGTGACA AAGGTTTCGG TGGTGGTTAC ACTGCTGCTG AAAAAGAAAA AATTGCTTCT TTGTATGAAG GTACATTAAG CGAGGTTACT GAGAAACAAG TGTTAAGTGG TACCGTTGTT GGTGTTACTG AACGTGATGT TATCATTAAC ATTGGTTTTA AATCAGATGG TCTTATTCCA CTTTCTGAAT TCCGTGATGT AGATGGCGGC GTTAAAGTTG GTGAAGTATA CGATGTATTT GTTGAAGATC AGGAAAACGC ATCCGGACAA TTAGTATTAT CCCGTCGTAA AGCCCGTATT GTTAAGGCTT GGGAAAATAT TCAAGGTGCT CTTGATAATG ATATCATTAT TGAAGCGCTT GTTAAGAGAA GAACTAAAGG TGGTTTGATC GTTGATTTAT TCGGCGTTGA AGCTTTCTTG CCAGGTTCTC AGATTGATGT TAAACCAATC CGTGACTTTG ATATCTTCGT TGGTAAGAAA ATGGAAGTTA AGGTTGTTAA AATCAACTAT ACAAACGATA ACGTTGTCGT ATCACACAAA GTGTTGATCG AAAAAGATAT CGAAAAACAA AAAGCTGTAA TCCTGAACAA CCTTGAAAAA GGTCAGGTAT TAGAAGGTGT GATCAAAAAC ATGACAAACT TCGGTGTGTT CATCGATTTA GGTGGTGTTG ATGGTTTACT GCACATTACA GATATTTCAT GGGGCCGCAT AAGCCATCCG CAGGAAGTAT TGAGCTTAGA TCAGAAAGTA CAGGTTGTAG TGTTGGATTT CGACGAAGAG AAAAAACGTA TCTCTCTTGG TATGAAACAA CTTACTTCTC ATCCTTGGGA TGCGCTTGCT GCTGATGTTG TTGTTGGTTC AAAAATCAAA GGTAAAATTG TTAACGTAGC TGATTACGGT GCATTCCTTG AATTACACCC AGGTGTTGAA GGTTTGATCC ACGTATCAGA AATGAGCTGG TCTCAGCACT TACGTAATCC ACAAGACTTT ATCAAAGTTG GTGATGAATT AGAAACAGTT GTATTGACAT TAGATCGTGA CGAACGTAAA ATGTCTTTAG GTATTAAGCA ATTGACAGAA GATCCTTGGA CTAAGTCTGA TGCGATCTCT AAATATGCTG TTGGTACGAA ACACACAGGT TTAGTGCGTA ACTTAACAAA CTTCGGTTTA TTCATCGAAT TAGAAGAAGG TATTGATGGT CTTGTTCACG TTTCTGATTT ATCATGGACG AAGAAAATCA AACACCCGTC TGAATTTGTT AAGGTTGGTG ATAAACTGGA TGTAGTTGTA TTGGAGTTGG ATGTTGAAAA CAGAAGACTT GCTTTAGGCC ACAAACAATT AGAAGAAAAC CCTTGGAATA CATTTGAAAC AATCTTCACT CCGGGTTCTA CTCATACTGC TACACTTATC TCTAAAAACG ATAAAGGTGC TGTTCTTGAG TTGCCATATG GTATCGAAGG TTTCGCTATG AACAAACATT TAGTGAAAGC TGATGGTGCA AATGCAGAAC AAGGTGAATC ATTAGATTTC AAAGTATTGG AGTTCTCTAA AGATGACAAA CGTATTGTAT TGTCTCATAC GAAAACATTC TCTGAAGTAG CTGAAGATGC AGCTGCTCCA GCAGACAAGA AAAAGAAAGC CGCTCCTGCT AAAGGCGCGA AAGCTCCTGC AACTGCGAAA ACTCCTGCTG TAGAGAAATC TACATTAGGT GATATCGAAG CACTTTCTAA CTTGAAAGAT TCAATGGACG GAAAGAAGTA A
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Protein sequence | MYNRVNIMLT PKPEDFNWDL VGDKGFGGGY TAAEKEKIAS LYEGTLSEVT EKQVLSGTVV GVTERDVIIN IGFKSDGLIP LSEFRDVDGG VKVGEVYDVF VEDQENASGQ LVLSRRKARI VKAWENIQGA LDNDIIIEAL VKRRTKGGLI VDLFGVEAFL PGSQIDVKPI RDFDIFVGKK MEVKVVKINY TNDNVVVSHK VLIEKDIEKQ KAVILNNLEK GQVLEGVIKN MTNFGVFIDL GGVDGLLHIT DISWGRISHP QEVLSLDQKV QVVVLDFDEE KKRISLGMKQ LTSHPWDALA ADVVVGSKIK GKIVNVADYG AFLELHPGVE GLIHVSEMSW SQHLRNPQDF IKVGDELETV VLTLDRDERK MSLGIKQLTE DPWTKSDAIS KYAVGTKHTG LVRNLTNFGL FIELEEGIDG LVHVSDLSWT KKIKHPSEFV KVGDKLDVVV LELDVENRRL ALGHKQLEEN PWNTFETIFT PGSTHTATLI SKNDKGAVLE LPYGIEGFAM NKHLVKADGA NAEQGESLDF KVLEFSKDDK RIVLSHTKTF SEVAEDAAAP ADKKKKAAPA KGAKAPATAK TPAVEKSTLG DIEALSNLKD SMDGKK
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