Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_1415 |
Symbol | pacL |
ID | 4184257 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 1643094 |
End bp | 1645793 |
Gene Length | 2700 bp |
Protein Length | 899 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638071408 |
Product | cation-transporting ATPase, calcium-transporting ATPase |
Protein accession | YP_678026 |
Protein GI | 110637819 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0474] Cation transport ATPase |
TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC [TIGR01517] plasma-membrane calcium-translocating P-type ATPase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.389752 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.069805 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCATTA AATACCCCTT CGAAAATCCG TTTTCCGTAT CGGCAGATAC ACTTATTAAT GACTTTCAAA CAAATACCCA GTCTGGTTTA ACAACCAGTG AAGCAGAAAA CAGAATAAAA GAATTCGGAC AGAATATTTA TCAGGTTCAG AAACAAAAAA GTATCTGGCT GATGCTGTTA TTACAGTTTA AAAGTCCGAT CGTTTATCTG CTTCTTGCTG CGGCAGCTGT TTCTTTATAC TTTAAAGATG TTATTGAAAC TGCTGCAATC CTTGTCGTAA TTGTGGTTAA TGCCATCATC GGTTTTTTAA TGGAGCTTCA GGCACGCAGT TCAATGAATG CGTTGAAAGA AATGGACGTG ATCAAAACAA ATGTGATCCG CGATGGAAAG AAACAAGAGA TCCCTTCTGA AAATATTACA CCCGGAGATA TTGTATTGCT GGAAGCCGGT GATGTTGTTC CGGGCGACGG ACGTATCATT GAAGCGAACC AGCTCAAATG TGATGAATCT TCTCTGACCG GTGAATCGTT ACCTGCGGAA AAAAAGACCG AGGAATTACA AGCCAATACT GCGTTGGGAG ATCAACACAA TATGGTTTTC AAAGGTACAT CGGTTGTGAA TGGAAACGGC AAAGCACTTA TTACTGGTAT AGCCGAACAT ACACAGCTCG GTACTATTAC GTCTCTGGTA GAAAAGTCGG AAGATAAACA AACACCCTTA GATCAAAAAA TAAATGTACT AAGTAAAAAA CTGATCTGGA TCACACTGAC AATGACTGCT ATATTTGCTG CAACAGGTGT GATACAGGGC AAAGAATGGG TGTTGATTTT CGAAAGCTCT ATAGCCCTTG CGGTGGCAGC TTTCCCGGAA GGACTTCCGA TTGTTGCCAC CATTGCGCTT TCGCATGGCA TGCTCCTTAT GGCTAAGAGG AATGCAATCG TAAAAAAACT TTCTGCCGTG GAAACGCTTG GCGGTACACG CGTGATTCTG ACAGATAAAA CAGGCACACT TACTGAAAAT AAAATTTATG TAGAAACCTT TTCTTTCCCG GAAGAAAAAA TAGCGGTAAA GATTAACAAT AACACCGTAA ACTACCCGGA TAAACAGATA GAAAAGAGCA AAGAGAATTT TGAAAAAATG CGCCTGGTGG GTGCGTTGTG TAACAATGCT CCCCTTGAGC AGCAGGAACA GAAAGACGAT CAGAAACCTG CTGCGGGCGA CCCGATTGAC ATTGCACTGA TTTTGCTGGC AAATGTTTCA GGAACATCTG CAAAAGACTT ACAAGGGCAA TTTGAACGTA TTGGCGAAGT GCCTTTTAAT TCTGATATCA AGATTATGGG AACGCTGCAT AATTCTCCAA ACGGGAAATT TGTAGCTGCT AAAGGTTCGG TAGAACATCT GTTAAACAAC TGCAGCAAAA TTCAATATGG CAGCGAAATT AAAGATCTGA ATGATGAACA GAAAAAAGGC ATTCTGGATG AATCTGAAAA AATGGCGGCA GACGGACTGC GTGTTATAGC GTTTGCTTAT CGGGAAGGTC AGGATATCAA TACAGACAAT TATTTATCGG AACTCATCCA CGTAGGTATG ATCGGGTTTC TGGACCCGCC GCGTATGGAC ATTAAAGATG CTATTTTGCG TTGCAGAAAT GCGGGCATAC GCATTGTTAT GATCACTGGT GACCACCCGA TGACAGCCTT AAATATTGCA AAAAAAATCG GACTGGTAGA TGAAAATGAA CAGCATGTAA TTATCGGCCA GGATCTGCCG GAGGCAGAAG CGGTAACAGA TGAATGGAGA GAGAAAATTC TTGCGACTTC TGTTTTTGCA CGTACTACAC CAAAACAAAA GCTGGAGATT GTTGAAGCCT TTCAAAAAGC CGGAAATATT GTTGCCATGA CCGGTGATGG CATAAACGAT GCGCCGGCGC TGAAAAAAGC AGACATTGGT ATTGCTATGG GACTGCGCGG CACACAGGTT GCAAAAGAAA CAGCAGGCAT TGTATTGAAG GATGATTCCT TTACATCGAT AGCTGAAGCA GTAGCACATG GCAGAGAAAT TTTTGACAAC ATTAAAAAAT TTATTGTGTA TTTATTCTCC TGCAATTTAA GCGAGATCTT TATTGTAACC ATACTTGGTT TTATTACACC GCTCTCTACC TTGTTACCGC TACAGATTTT ATTCCTGAAC ATGGTAACCG ATGTGTTTCC TGCCCTTGCA TTAGGCGTAG GCAAAGGCGA TGAGAAAGTA ATGGAAAAAC AACCGCGGGA TGCAAAAGAA AATATACTTA CCAATAAAGA CTGGATAAGA ATTGCATTGT ACTCCTTACT TATTTCTGTA TCGGTTATCA TTTCTGTGTT ATATTGCAAT CACATTATTG AATCAGACCA TAAAATTGCT AACAATGCTG CATTCCTTAC ATTAGCCTTT TCACAACTTT TCCATGTATT AAACATGTCG TCCTTCAGTT CAAAAATGTT CCTGAACGAT ATAACAAAAA ATATATTTGT GTGGCTGGCA ATTTTATTAT GTGCAGGTAT TATGATCACG GTATATGCAA TCCCGTATAC ACGCCTTATA CTGGGTCTTG AACTGTTACC AGCAGAAGCT GTAGTCGTTT CAATCGCATG TAGTTTCATT CCGGTGGTAG TAGTTCAAAC ATATAAACTA TTCTACAAAA TCACTAAAAG CAAAAAATAA
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Protein sequence | MSIKYPFENP FSVSADTLIN DFQTNTQSGL TTSEAENRIK EFGQNIYQVQ KQKSIWLMLL LQFKSPIVYL LLAAAAVSLY FKDVIETAAI LVVIVVNAII GFLMELQARS SMNALKEMDV IKTNVIRDGK KQEIPSENIT PGDIVLLEAG DVVPGDGRII EANQLKCDES SLTGESLPAE KKTEELQANT ALGDQHNMVF KGTSVVNGNG KALITGIAEH TQLGTITSLV EKSEDKQTPL DQKINVLSKK LIWITLTMTA IFAATGVIQG KEWVLIFESS IALAVAAFPE GLPIVATIAL SHGMLLMAKR NAIVKKLSAV ETLGGTRVIL TDKTGTLTEN KIYVETFSFP EEKIAVKINN NTVNYPDKQI EKSKENFEKM RLVGALCNNA PLEQQEQKDD QKPAAGDPID IALILLANVS GTSAKDLQGQ FERIGEVPFN SDIKIMGTLH NSPNGKFVAA KGSVEHLLNN CSKIQYGSEI KDLNDEQKKG ILDESEKMAA DGLRVIAFAY REGQDINTDN YLSELIHVGM IGFLDPPRMD IKDAILRCRN AGIRIVMITG DHPMTALNIA KKIGLVDENE QHVIIGQDLP EAEAVTDEWR EKILATSVFA RTTPKQKLEI VEAFQKAGNI VAMTGDGIND APALKKADIG IAMGLRGTQV AKETAGIVLK DDSFTSIAEA VAHGREIFDN IKKFIVYLFS CNLSEIFIVT ILGFITPLST LLPLQILFLN MVTDVFPALA LGVGKGDEKV MEKQPRDAKE NILTNKDWIR IALYSLLISV SVIISVLYCN HIIESDHKIA NNAAFLTLAF SQLFHVLNMS SFSSKMFLND ITKNIFVWLA ILLCAGIMIT VYAIPYTRLI LGLELLPAEA VVVSIACSFI PVVVVQTYKL FYKITKSKK
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