| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1015 |
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| Symbol | yncD |
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| ID | 4183752 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 1162032 |
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| End bp | 1164284 |
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| Gene Length | 2253 bp |
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| Protein Length | 750 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638071013 |
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| Product | tonB-dependent receptor |
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| Protein accession | YP_677632 |
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| Protein GI | 110637425 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTTA TTCTTATTGT GCTGCTGCAA TTTCTATATC TATTTGCACA TGCCCAAAGC
GGTGTAATTA AAGGCAAGGT AGAGCAGGTA CACAATCACA TACCCATACT CAATAGCTAT
GTACAGCTTA CGAATAGAAG CAATCAGATA GCTTATACAG ATGTTGAAGG GAGGTTTGAA
TTCACGGCAT TGCCGGCAGG TACGTATTAT ATCCGCATCT ATTCACTGGG ATATGAATCA
CTGACAGATA CCATATACCT CAATCCTTCG GAAACACTTT ATACAAGCTA TGCGCTCAAC
GAAACGACAG TTGAAATTCC CGAGATACCA ATCGCTGCAC GCAGGGAAGT GGCCTTTACA
ACCATCAGTT CCATCGATTT TAAACTGCGG CCTGTAAATA CCACGCAGGA TCTGTTGCGG
CTGGTACCGG GTTTATTTAT TGCGCAGCAT GCCGGAGGCG GTAAAGCCGA ACAGCTTTTT
TTAAGAGGCT TTGATGTAGA CCATGGCACC GACGTTGCCG TATCTGTAGA CAACATGCCG
GTGAATATGG TTTCGCATGC ACACGGACAA GGCTATGCGG ATCTGCATTT TGTAATCCCT
GAAACGGTTG ATAACATTCA GTTCAACAAA GGCTGTTACC AGACAGGCAC CGGCGACTTT
AACACTGCCG GAGCTGTTCG GCTGCAAACA AAAAATTTCA TCCCTGAAAA TAAAATCAAA
CTCGAAGCCG GACGCTTCAA TACCAGCAGA GGAATGATCT TATTAAATCT GCTGCCTGCA
AAAGATACCA TTGAACGAAA ACACAGTGCT TACATGGCTT CAGAAGCGTT CTATTCCAAA
GGCTTTTTTG AAAGTCCGCA GCATTTCAAC CGATTCAATG TGTTCGGAAA ATATCACGGC
ATCTTATCAC GCAATACCTT CTTAACGGCA AGTATCTCTA CCTTTACAAG CAGATGGGAT
GCTTCGGGGC AAATCCCGCA GCGGGCCATA GATAACGGCA GCATTGGCTG GTTTGGTGCC
ATTGATGATT CAGAGGGAGG TAAAACAACG CGTTCAAATG CCAATGTACA GCTTACAACA
GATGCAGGAA ACCTGGGTAC ATGGACCAAC CAGGTATTCT GGAGCAAGTA TACCTTCACG
CTGTTTTCAA ATTTCACCTT TTATAAAGAT GATACTACGC ATGGCGATGA AATTCATCAA
TATGAAAACA GAAATATGTT TGGCTATAAT ACGTCGTTGA AACGAAACTA TACACTTGCC
GGGAAAACAA TACAAACGAA TATTGGAGCT GGTTACCGCG GAGACTACAT TACAAACATC
GGTCTTGCTC ATGTTGAAAA AAGGCGTTTT CTCTATGACA CAAAGAAAGG ATCTGTTCGT
GAAAATAACA TGAACGGTTT TATAGATGCA AGCCTCTTGC TTTCAACCCG TTTCACATTC
AATGTGGGTA TTCGGTATGA CTACTTCCTG TTTTCATATA AAAGCAGCAT CGATGATACG
AGCTCTGCAA GCCGTGGGCA GGGAATTTTA AGCCCGAAGG CAACCATATA CTACAAACTT
ACAAACGCTG TACAGCTCTA CCTTAGCGGC GGTTACGGAT TTCATTCAAA CGATGCACGT
GTTTCTGTAT ACAAAACAAA CCAATCAAGT TTACCAAGAG CCAAATCTGC AGACCTGGGC
ACCAATCTGA AAATAGGTGC TAAATTATTT GTGAACACGG CCCTTTGGTA TATGTATCTG
GAATCGGAAT ATGTATATGT AGGTGATGAT GGTTTGCTGG AACCCAGCGG AAGCACCAGA
CGCATGGGCA TTGATGTGAG TATGAGATAT CAGGTTTTGA AATGGCTGTA TGCGGATATA
GATCTGAATC TTGCCAAACC AAGGTACATT GAGCTGCCGG AAGGCGAAAA CTATGTACCG
CTGGCACCGC CTGTAACCTC TACCGGTGGT TTGTCTGTAA AGCAGCGTAA CTGGAGCGCA
GGCTTAAGAT ACCGGTATCT TGGAAAACGT GCCGCGGTTG AAGACAATAC AATTATTGCT
TCCGGTTATT TTATTACGGA TGCGGTAGTA AATTATCAAT GGAAGCAGAT GCAGTTTGGT
ATCAGTGCTG AAAATATTTT CGATCAAAAA TGGCGGGAAG CACAATTTGC AACCGAATCT
CAATTGAAAA ATGAAACAAC ACCGGTAACT GAAATTCATT TCACACCCGG CACACCTTTT
TATTTAAAAG GAAATGTCAG TGTTTTATTT TAA
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| Protein sequence | MKFILIVLLQ FLYLFAHAQS GVIKGKVEQV HNHIPILNSY VQLTNRSNQI AYTDVEGRFE
FTALPAGTYY IRIYSLGYES LTDTIYLNPS ETLYTSYALN ETTVEIPEIP IAARREVAFT
TISSIDFKLR PVNTTQDLLR LVPGLFIAQH AGGGKAEQLF LRGFDVDHGT DVAVSVDNMP
VNMVSHAHGQ GYADLHFVIP ETVDNIQFNK GCYQTGTGDF NTAGAVRLQT KNFIPENKIK
LEAGRFNTSR GMILLNLLPA KDTIERKHSA YMASEAFYSK GFFESPQHFN RFNVFGKYHG
ILSRNTFLTA SISTFTSRWD ASGQIPQRAI DNGSIGWFGA IDDSEGGKTT RSNANVQLTT
DAGNLGTWTN QVFWSKYTFT LFSNFTFYKD DTTHGDEIHQ YENRNMFGYN TSLKRNYTLA
GKTIQTNIGA GYRGDYITNI GLAHVEKRRF LYDTKKGSVR ENNMNGFIDA SLLLSTRFTF
NVGIRYDYFL FSYKSSIDDT SSASRGQGIL SPKATIYYKL TNAVQLYLSG GYGFHSNDAR
VSVYKTNQSS LPRAKSADLG TNLKIGAKLF VNTALWYMYL ESEYVYVGDD GLLEPSGSTR
RMGIDVSMRY QVLKWLYADI DLNLAKPRYI ELPEGENYVP LAPPVTSTGG LSVKQRNWSA
GLRYRYLGKR AAVEDNTIIA SGYFITDAVV NYQWKQMQFG ISAENIFDQK WREAQFATES
QLKNETTPVT EIHFTPGTPF YLKGNVSVLF
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