| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0940 |
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| Symbol | ycdC |
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| ID | 4183639 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 1088091 |
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| End bp | 1088723 |
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| Gene Length | 633 bp |
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| Protein Length | 210 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 638070939 |
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| Product | transcriptional regulator |
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| Protein accession | YP_677559 |
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| Protein GI | 110637352 |
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| COG category | [K] Transcription |
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| COG ID | [COG1309] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.00130273 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTGACA ATAAAATAAA AAACGAAGAC GGCAAGCTCG AACTTATTAT TAATGCGGCT
CAAAAACGCT TTGCTCATTA TGGTTTATGC AAAACAACCA TGAATGAAAT TGCGTCTGAT
GTTGGCATGG GTAAAGCCTC TTTATATTAT TATTTCCCTG ATAAAGAAAC GTTATTCGAA
GCTGTCATTA AGAAGGAACA GAATGTTTTT TTTGATGAAA TGGATAAAAT TCTTAATTCA
GGGATCGATG CAACTGCATT ATTAAAAAAG TATGTTAAAC TACGAAGTTT ACACTTCCGT
CATTTATTAA ACTTATCAAA ATTGCGATCT GACTTTTTTC ACAATACCAA GCCGGTTTTC
GCCAAAGCTT TTGAAAGCTT TAAGCAAAAA GAAGTGGAGA TCGTTGCAGG CATCATACAA
TATGGTATTA CTACAAAAGA ATTTAAACGT GGGAATAAAC ATGAAAATGC AGAGTTCCTT
GTACACCTGT TATTAGGTGT CAGAATGGTT AAATTGAAGT ATAAAGAAAT CAATGATTTT
GACGAATCCG ATTACGAAGA CCTTGACAAA AATATGTGTA AAGTAGCCGG TATGTTTTTA
AAAGAAATAC AAACAGAAGT AGCATCCAGA TAA
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| Protein sequence | MTDNKIKNED GKLELIINAA QKRFAHYGLC KTTMNEIASD VGMGKASLYY YFPDKETLFE
AVIKKEQNVF FDEMDKILNS GIDATALLKK YVKLRSLHFR HLLNLSKLRS DFFHNTKPVF
AKAFESFKQK EVEIVAGIIQ YGITTKEFKR GNKHENAEFL VHLLLGVRMV KLKYKEINDF
DESDYEDLDK NMCKVAGMFL KEIQTEVASR
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