Gene CHU_0907 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_0907 
Symbol 
ID4186375 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp1037662 
End bp1038204 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content43% 
IMG OID638070907 
Productputative colanic acid biosynthesis acetyltransferase WcaF 
Protein accessionYP_677528 
Protein GI110637321 
COG category[R] General function prediction only 
COG ID[COG0110] Acetyltransferase (isoleucine patch superfamily) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.00617955 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTATCAGG ATCTTTCTCG TTTTTCAATG CCTGCTGATT TCAGAGGTAA ACCCGGTTGG 
TATGTACAGT TGTGGTGGGT TGTTCAGGCG CTCTTATTTC ATCCTTCGCC TCAAATTATG
TATGGCTGGC GCCGGTTATT ACTGCGGGCT TTTGGAGCGC AGATCGGTAA AGGTGTAATC
ATACGTCCTT CTGCACAAAT CACCTATCCA TGGAAATTAG CTATTGGAGA TTATGCATGG
ATAGGGGATG AAGTTGTGTT ATATACGCTG GGTAATATAA CAATCGGTAA GAATGCTGTA
GTATCCCAAC GTTCATACAT TTGTACGGGC AGCCATGATT TCAAAAAAGA AGCATTTGAT
ATTTTTTCAA AACCAATAAT TATTGACGAT GAATGCTGGC TGGCGACAGA TGTGTTTGTT
GGTCCCGGTG TTAAAATTAG TAAGGGAATA GTAATTGGTG CGCGCAGCAG TGTATACAAA
AATATTGAAG CCACACCCGG TATTTATACA GGAAACCCCG CAACCCGTGT TGGGGATCGG
TAG
 
Protein sequence
MYQDLSRFSM PADFRGKPGW YVQLWWVVQA LLFHPSPQIM YGWRRLLLRA FGAQIGKGVI 
IRPSAQITYP WKLAIGDYAW IGDEVVLYTL GNITIGKNAV VSQRSYICTG SHDFKKEAFD
IFSKPIIIDD ECWLATDVFV GPGVKISKGI VIGARSSVYK NIEATPGIYT GNPATRVGDR