| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0546 |
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| Symbol | ragA |
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| ID | 4186177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 630646 |
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| End bp | 633720 |
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| Gene Length | 3075 bp |
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| Protein Length | 1024 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638070551 |
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| Product | outer membrane receptor; ragA protein |
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| Protein accession | YP_677173 |
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| Protein GI | 110636966 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAC CAGACAAATT ATTGAATACA AAGTTATGGA TCGCATTGTT ATTTATTACG
GGAATTCAAT GGGCGGCATA TTCGCAAACA ACATTAAAAG GTATTGTTAC AGATGAAATT
ACAAAAGAAA CAATTATAGG TGCAATTGTT CAGGTGAAAG GTACCAGTGT TGGTACTGCT
ACCGACGTGG ATGGTTATTA TGAAGTACGG GTAGATTCAT TTCCATGTAA AATTGTTGTC
TCATACATTG GTTATGTTAC CAGGCAGATA GATGTGAACG CTGCTGCTAC AGAGCTTAAC
ATCACATTAA CATTGAAAAC CGACGAATCA GAAATTGTTA TTGTTGGTTA TGATACGCAG
CGCAAGGAAG ATGTTGTTGG ATCAATTGTG AAGATTGATC CGGAAGAAAC AAAAAATATT
CCGGTTGCGA GTTTTGATGC ACAGCTGCAG GGTAAAGCTG CCGGGGTGCA GGTGAACTCG
CAGAACGGTA TTCCCGGAGA TGCAGTAGTA GTGCGTATTC GTGGAGCATC AACCATTAAT
GCAAGTGCGG ATCCGCTATA CATTATTGAT GGGGTTTTTA TCAATAATGA AAGTATGTCG
ACCGTTGATC TTGGCGGTAA AGCTACATCT CCGTTAGCAG ATATAAACCC TGCGGATATT
GAAAATATTG AAGTGCTGAA AGATGCCAGC GCCACTGCAA TCTATGGTTC AAGGGGTGCT
AATGGTGTTG TGATTGTTAC TACCAAAAGA GGTAATTATG AACAGAAACC AACATTAACA
TTTACTACAA CGCAGGGTGC AGCCTGGGCG GATAAAAGCA GATTGTGGAA ACAGACTACC
GGCCCTGAAC ATGCGACACT TGTAAACGAA GCATGGATCA ATTCTGGTGT TGACAATCCA
TCCTTAAATC AGAATTATGC CAACAGACCG TTCAGGCCTG TAAGCGAAGG AGGACGCGGT
AATCCGGAAG ACCAGCAGAC ATATGACCGT ATCAGTGATT TATTCCGTAC GGGTTATTTA
CAGCAATATG ACCTGGGCTT ACAAGGCGGC GGTAAAAACA ATAAATATTA TTTCGGTGCA
AGCTATAATA AGCAGGAAGC AAATATTCGT CCGGTGTTTT ATGAGCGTGC AAGTTTTAAA
GCAAATATTG ATTCAAAAAT CAGTGAACGT ATTTCGTTTG GTGTAAGTAA TACGTTATCG
TATTCGTTCA GAAACCAGAC ACGTGCAGGT ACCGGAACCG GTACAGGTAT TTTTCAGTCT
GCCTTACACA CACCAACGTA TCAGCCAAAA AACAATCCTG ATGGGACACC GTCAAGACAA
TCTCCTTTTG ACAATCTCGA TATTTTATTA AGTGATGTAT TTATCCGAAC AGCGAGTTTA
CGTTATATAG GCAATAGCTA CGCGACATTT GATTTATTGA AAAATAAGGA TCTTAAATTC
AGAACAAGCT TCAGTTTAGA TTATAACCTG TATGATGAAT CTGAATACAA TACGTCAAGA
ACGCTGAAAG GAGCCGCTAC AAGAGGCTTT GGCCTGTCTA ACATTTCTCA GAATACAACC
TGGATCAATG AACAGACAAT TACATACCGT AAGTCTATTC GCAACAAACA CACCCTTGGT
GTATTGGTAG GTAATACCTT ACAGAGTAAT ACACTTAAAG GAACCTATAC AACCGGTACC
GGTTTCCCAA ACAATACCTA TACACAGATT TCATCTGCCA GTGTGCGGAA CGCAAATCAG
GAGTGGACAA AGTCAACGCT TGCTTCCTTT TTCTCCCGTG TAGATTACAA CTACAAACAT
AAGTATTATG TAGAGGCTTC TATACGTGCC GATGGTTCTT CTAAGTTTGG TGAAAACAAC
CGTTGGGGAT ATTTTCCTTC AGTAGGCGCA TCCTGGAGAA TTAAGCAGGA AAACTTTATG
CAGAATGTTA AACCTGTATC GGATCTTAAA GTCAGAACAA GTTATGGTAT TCTGGGAAAT
CAGAATGGGA TCAACAACTT TGCTGCACAA GGTTTATGGA CAGGTGGTGC AAACTATCCG
AATACACCGG GAACAGCAGA TCAGCCGGGA ACAACGCCCC TTCAGTTAGC AAATAAAAAT
CTGCGTTGGG AAAAAACACA GCAGCTGGAT TTTGGTATTG ATATAGCATT CTTTAATAAC
CGCATTGCGT TAACGACTGA TTTTTATTAC AAGCGTACAA CAGATCTTCT GTTACCAACA
CAGGTTCCTG CAACAACCGG ATTTACCACA TACCTGACAA ACTCTGGCGA GATCAGTAAC
AAAGGGATAG AGATTGCTAT TCAAACACAG AATATCAAAT CGAAAAAATT CTCCTGGAAC
ACAAGCTTCA ACTTTACACG CAATGTAAAC AAAGTTGAAA AGCTTGAAAA CCCATACGTG
TACGGATCAA GAGATATGGT GCGTAACGAA GAAGGATACG CATTGTATTC TTTCTGGATG
TACAATCAAT TATATGTTGA CAAACAAACC GGACAGGCAG TGTTTGAAGA TGTTAACGGA
GATGGACAAA TCACGGTTGC GGATAGAAAA ATTATGGGTA ATGCTAATCC TAAATTCTTT
GGAGGTCTTA CAAACACATT TAAATATGCA GGTTTTGATC TGAATGTTTT CTTCGTATAT
CAATATGGAA ATAAGGTTGT AAGCTTTGAC CGTATCCTCA ATGAAGGTGG CGGTACAAAA
GATAATAACA GAGGTATTTT TGAATACAAC ATGAACAGAT GGCAGAAACC TGGTGATGAT
ACAGATGTGC CAAGAGTTAC AAGTGTAGGG AACAATTATG GTATTGAACA GAACAGCCGG
TTCCTGGAAG ACGGATCATT CATACGCTTA AAAACATTGA CACTTGGCTA TACAGTACCG
GTAGACTTTA CTAAAAAATA TTCCGTGCAG AGTGTACGCT TCTTTGTTAC AGGGACCAAC
TTATTATTAT TCACGAAATA TAAAGGTCCG GATCCGGAAG CTGTACATAC CTCAGAACAG
AATGCACGCG GCATTGATGT GGGTACACCT CCGCAACCTG TATCTGTACA AGGCGGATTA
ACAATAACTC TTTAA
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| Protein sequence | MKKPDKLLNT KLWIALLFIT GIQWAAYSQT TLKGIVTDEI TKETIIGAIV QVKGTSVGTA
TDVDGYYEVR VDSFPCKIVV SYIGYVTRQI DVNAAATELN ITLTLKTDES EIVIVGYDTQ
RKEDVVGSIV KIDPEETKNI PVASFDAQLQ GKAAGVQVNS QNGIPGDAVV VRIRGASTIN
ASADPLYIID GVFINNESMS TVDLGGKATS PLADINPADI ENIEVLKDAS ATAIYGSRGA
NGVVIVTTKR GNYEQKPTLT FTTTQGAAWA DKSRLWKQTT GPEHATLVNE AWINSGVDNP
SLNQNYANRP FRPVSEGGRG NPEDQQTYDR ISDLFRTGYL QQYDLGLQGG GKNNKYYFGA
SYNKQEANIR PVFYERASFK ANIDSKISER ISFGVSNTLS YSFRNQTRAG TGTGTGIFQS
ALHTPTYQPK NNPDGTPSRQ SPFDNLDILL SDVFIRTASL RYIGNSYATF DLLKNKDLKF
RTSFSLDYNL YDESEYNTSR TLKGAATRGF GLSNISQNTT WINEQTITYR KSIRNKHTLG
VLVGNTLQSN TLKGTYTTGT GFPNNTYTQI SSASVRNANQ EWTKSTLASF FSRVDYNYKH
KYYVEASIRA DGSSKFGENN RWGYFPSVGA SWRIKQENFM QNVKPVSDLK VRTSYGILGN
QNGINNFAAQ GLWTGGANYP NTPGTADQPG TTPLQLANKN LRWEKTQQLD FGIDIAFFNN
RIALTTDFYY KRTTDLLLPT QVPATTGFTT YLTNSGEISN KGIEIAIQTQ NIKSKKFSWN
TSFNFTRNVN KVEKLENPYV YGSRDMVRNE EGYALYSFWM YNQLYVDKQT GQAVFEDVNG
DGQITVADRK IMGNANPKFF GGLTNTFKYA GFDLNVFFVY QYGNKVVSFD RILNEGGGTK
DNNRGIFEYN MNRWQKPGDD TDVPRVTSVG NNYGIEQNSR FLEDGSFIRL KTLTLGYTVP
VDFTKKYSVQ SVRFFVTGTN LLLFTKYKGP DPEAVHTSEQ NARGIDVGTP PQPVSVQGGL
TITL
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