| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0534 |
|---|
| Symbol | |
|---|
| ID | 4185164 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 618334 |
|---|
| End bp | 619290 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638070539 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_677161 |
|---|
| Protein GI | 110636954 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.434063 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCTA ATACACGTCG TATCTTTATC AAGCAGTCGG CTATGGCTGC TGCAGGCATT
GCTGCAACAG CGCTGCTGCC TTCTTTTTCC GTTTTTGCAG AAGAACAGAA AAAATTTGAT
TTTACTATTT CACTTGCACA ATGGTCGCTG CATAAAGCCT TGTTCAGCGG GCAGATCAGC
AACCTGGATT TTCCCGTAGT GGCCAGGCAG CAATACGGTT TTGAAGCCGT AGAATATGTA
AATCAGTTTT TCAAAGACAA AGCAACAGAC ACTGTCTATC TGAATCAGCT GAAACAGCGC
TGCAACGACA ATGGTGTGAA GAGCGTACTG ATCATGGTAG ATCAGGAAGG GTTACTCGGA
GATAAAAACG AAGCCGAAAG AGCCAAAGCG GTAGCGAATC ATTACAAGTG GGTGGACGCA
TCCAAACACC TGGGCGGGCA TGCCATCCGC GTAAATTTAC ATGGTGATGC AACGGCAGAA
GAGTGGCACC GCTCATCTGT TAAAAGTTTG CGCGCCCTCG CTGAATATGC AGAGAAGATG
GATATGACCA TTCTTGCGGA GAACCACGGC ACCTGGTCCT CTAACGCAGG CATGCTGGTT
AAGGTGATAC AGGAAGTGAA TCACAAACGC TGCAAGACGA TGGTTGATTT TGCAAACTTC
TGCGTGCGCC GCGAAAAAGG AGACCTGTGG GAATCGCCGT GCGTGGACTG GTACGACAAA
TACAAAGGCG TAGAAGAATT GCTGCCGTAT GCAAAAGGCG TAAGTGCAAA AACATTTGAT
TTTACAGCAA GCGGAGAAGA AAGCAATACA GATTTTACCC GTATGCTTAA GCTCGTAAAG
GCCTCGGGCT ACAAAGGGTA TGTCGGCGTA GAGTATGAAG GTGAACGCTT AAGCGAAGAC
GAAGGAATCA AAGCAAGTAA GAAGCTGCTG GAAAGAATCA GAAAACAGTT AGCATAA
|
|---|
| Protein sequence | MNANTRRIFI KQSAMAAAGI AATALLPSFS VFAEEQKKFD FTISLAQWSL HKALFSGQIS
NLDFPVVARQ QYGFEAVEYV NQFFKDKATD TVYLNQLKQR CNDNGVKSVL IMVDQEGLLG
DKNEAERAKA VANHYKWVDA SKHLGGHAIR VNLHGDATAE EWHRSSVKSL RALAEYAEKM
DMTILAENHG TWSSNAGMLV KVIQEVNHKR CKTMVDFANF CVRREKGDLW ESPCVDWYDK
YKGVEELLPY AKGVSAKTFD FTASGEESNT DFTRMLKLVK ASGYKGYVGV EYEGERLSED
EGIKASKKLL ERIRKQLA
|
|---|
| |