| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0255 |
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| Symbol | ypdA |
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| ID | 4185006 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 307200 |
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| End bp | 309095 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 638070265 |
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| Product | sensor protein |
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| Protein accession | YP_676887 |
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| Protein GI | 110636680 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2972] Predicted signal transduction protein with a C-terminal ATPase domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTCAA AATTCTTTTT TCCTTTTTTG GATACTCCAG CTCTTATAAA AAAAGTACTG
ATCAGCGCAG TAACAATATT ACTGTCTGCA TCGGCATATG CAGCTCCTGT ACCGATTGTT
TTAACTAATA CAAGCAAAGA ATATTATGTG GTTAGAAAAT ACGCGGAATA TTATGAAGAT
CAGCAGCGCG GAAAAAAAAT AACTGAAATT GCCGGAAAGG TACCCTTTAA AAAAATTTCT
GAAAAAGATC TGGATTTTAC CAATAACAAC CTCACATCTG CTTACTGGCT GCATTTTTAT
GTGGTAAATC ATACGCCTGA CTTAACAGAT TTTATTATTG AAATGTATGA TTATGACATC
AATGAAGTAG ATCTGTACAT TAAAGATTCA AAAGGAAGTT TTATTGAAAA AAAATCGGGG
CTGGACTTCC CTTTTGACAC GAGAGATTTT GCGCACAAAA ATATTTGTTT TAAGCTTTCT
ATTCCGCTGG CTGACACAAC AGAAGTATAC ATGCGTTTAT ACTCATCCTC CATAAATGTG
TTTGAGCCAG TTATTAAAAC ACATGAACAG TTTTATGCAT ACAGCCTGAA GGAATATGTG
CTGTTAGGTG TTTTTTATGG ATTTATGCTG CTTATTATTT TATATAACTT TATTTCATTT
TTAATCCTTC GGGTAACTCA TTATCTCTAT TATGTAATCT ACGCAATCGG AATACTGATT
TATCTCATGA GTAAGAATGG AACAGGATTT CAATATCTGT GGCCTGATTT TCCACAGATA
AACAGCCATA TTGATTCGTT AAGCCTAACG GTAAGTATTA TTTTCTTATC CCTGTTTACA
ATGGAGTTTC TTCAGATCAA GAAACAGCAA CTACATCTAT ACAAACTTTT CCAGTGCATT
ATATGCCTCC AGGTTATTGG CATTGTGCTT CACGGTATAA TCTGCTCAAC ACCGATCTTT
ACCATATTTA ATATTTTGTT TATACAGATA TTTTTCTGGG TTGGATACAA CCGATATAAA
AAAGGTCTTA AAAGTGCGCT GTGGTTTGTA TTCGCGTTTG TGTTTTTAAA TTTATTCTTT
TTAATCTTCT GGCTGGAATA CATTAACTGG CTGCCATCTT CCATATTTAC GGTATATGCA
CTCAATATTG GTGTTATTGT ACAGTTCATT TTTCTATCCA TCAGTATAAC AGAATCGATT
AAAGATTCAG AACGTGAAAA ACAAAAAACA ACGCTGGAGC TTATTACAAC AACTGAAAAA
AACACGTCCA TGCGATTGAT TGAATTGAAA CGGCAAATGA ATCCGCATTT TATTTTCAAT
GCATTAAATT CAATTCTTGA ACGCATACTC AGTGATAAAA AAGAACAGGC TGTTGATTTT
CTGATGCGGT TTTCAAAACT GATACGAAAC ACGTTGCATT ATTCGGATCA GATATTTGTT
CCGCTTTCTG AAGAAATTGT ATTTATTGAA AATTATTTAT TGTTGGAACA AATGCGTCTG
GGCAATTCTT TTTGTTATAC AATAGATGTT GCTGCAGATA TCCATACAGA TGATTATGAA
TTTCCGTCGT TTATCCTACA GCCTTTTATT GAGAATGCCA TCTGGCACGG GCTTAGGCCC
AAATCCGGAA ACAAAACCAT CCATTTAAAA ATCTATCATC ACAATAATAT TCTGCACGTT
CAGATTATGG ATAATGGTGT TGGAAGAAAA GCTGCACAAA AAAAACAAAC AGAAACACAT
GAATCAAAAG GGATCACGTT GGTTCGTGAA CGGCTCTCAC TTATTCAGTT TACCTATAAA
TTAAAAACAG AACTTATACT AACAGATCTA TACAACGACT TAAATCAAGC TAGCGGAACA
ATGATACACA TTAAAATAGA AACCGGTCAT GAATAA
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| Protein sequence | MFSKFFFPFL DTPALIKKVL ISAVTILLSA SAYAAPVPIV LTNTSKEYYV VRKYAEYYED
QQRGKKITEI AGKVPFKKIS EKDLDFTNNN LTSAYWLHFY VVNHTPDLTD FIIEMYDYDI
NEVDLYIKDS KGSFIEKKSG LDFPFDTRDF AHKNICFKLS IPLADTTEVY MRLYSSSINV
FEPVIKTHEQ FYAYSLKEYV LLGVFYGFML LIILYNFISF LILRVTHYLY YVIYAIGILI
YLMSKNGTGF QYLWPDFPQI NSHIDSLSLT VSIIFLSLFT MEFLQIKKQQ LHLYKLFQCI
ICLQVIGIVL HGIICSTPIF TIFNILFIQI FFWVGYNRYK KGLKSALWFV FAFVFLNLFF
LIFWLEYINW LPSSIFTVYA LNIGVIVQFI FLSISITESI KDSEREKQKT TLELITTTEK
NTSMRLIELK RQMNPHFIFN ALNSILERIL SDKKEQAVDF LMRFSKLIRN TLHYSDQIFV
PLSEEIVFIE NYLLLEQMRL GNSFCYTIDV AADIHTDDYE FPSFILQPFI ENAIWHGLRP
KSGNKTIHLK IYHHNNILHV QIMDNGVGRK AAQKKQTETH ESKGITLVRE RLSLIQFTYK
LKTELILTDL YNDLNQASGT MIHIKIETGH E
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