Gene CHU_0240 details

Gene Information

• Locus tag: CHU_0240
• Symbol: thiC
• ID: 4184991
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cytophaga hutchinsonii ATCC 33406
• Kingdom: Bacteria
• Replicon accession: NC_008255
• Strand: +
• Start bp: 289526
• End bp: 291418
• Gene Length: 1893 bp
• Protein Length: 630 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 638070250
• Product: thiamine biosynthesis protein ThiC
• Protein accession: YP_676872
• Protein GI: 110636665
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0422] Thiamine biosynthesis protein ThiC
• TIGRFAM ID: [TIGR00190] thiamine biosynthesis protein ThiC

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.211755
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACAACAG AAAACACAAA CATGGCGCCG CAGATCACGC GGGAACCACT AACAGGATCA 
CAAAAAATTT ATGTGTCCGG CACAATGCAT CCATCGGTAA AGGTGGCCAT GCGCGAGATC 
AAACTTGAAG ACACTGTGAT TCATACAGGC CTGAAAGGTG CTGCTGAAAA ACGTCAGAAA 
AACCCATCTG TTACGGTATA CGATACCAGC GGTCCGTACA CCGACCCGAG CATCGACATC 
GACATCCGCA AAGGCCTGCC GCGCTTACGC GAGCAGTGGA TCCTTGAGCG CGGGGATGTG 
GAAGAACAGA AAGAATCCTT TTCAGAATAT ACACAGAAGC GCAACAACGA TCCGTCTTTG 
GACCACTTGC GTTTCGATCA CCTGAAACAA CCGCTGCGTG CCAAACCGGG ACAAAATGTT 
TCGCAGATGC ACTACGCGCG TAAAGGCATC ATCACGCCGG AGATGGAATA CATCGCCATA 
CGTGAGAATA ACCGCATTCA GGAATTGCAG GCATCCGGCG ATTCCATTAA GTCGCTTTGG 
GATCAGCACG AAGGACACAG CTTTGGTGCA GCCATTCCGA AAGTAATTAC GCCGGAATTC 
GTGCGCGAAG AAGTAGCGCG CGGAAGAGCC ATTATTCCTT CCAACATCAA CCACCCGGAA 
AGCGAGCCGA TGATCATCGG CCGTAACTTC TTAGTGAAGA TCAATACCAA CATCGGTAAC 
TCTGCAGTAA CGTCTTCCAT TGAAGAAGAA GTTGAGAAAG CGGTATGGAG CTGCCGTTGG 
GGCGGTGATA CCCTGATGGA TCTTTCTACC GGTAAAAATA TTCACGAGAC ACGCGAGTGG 
ATCATCCGGA ACTGTCCGGT GCCGGTTGGT ACCGTGCCGA TCTATCAGGC GCTTGAAAAA 
GTAAACGGTA AGGCAGAAGA CTTAACGTGG GAAATTTTCC GCGATACCTT AATTGAACAG 
GCAGAACAAG GCGTGGATTA CTTCACCATC CACGCAGGTG TATTGTTGCG TTACATTCCG 
TCTACGGCAA AACGTGTAAC AGGTATTGTT TCCCGTGGTG GTTCGATCAT GGCGAAATGG 
TGTCTGTCGC ACCACAAGGA AAACTTCCTG TACACACACT TCGAAGAGAT CTGTGAGATC 
ATGAAAGCAT ACGACGTTGC CTTCTCGTTA GGAGACGGAT TACGTCCGGG TTGCTTAGCA 
GATGCCAACG ACGAAGCACA ATTCTCAGAA TTAAAAACCT TAGGTGAATT GACAGAGATC 
GCCTGGAAAC ACGATGTACA GGTGATGGTA GAAGGTCCGG GTCACGTGCC GATGCATATG 
ATCAAAGAAA ATATGGACAA GCAGTTGAAG GAGTGCCACG AAGCACCGTT CTACACACTT 
GGTCCATTGA CGACCGATAT CGCACCGGGT TATGACCACA TCACGTCTGC CATCGGTGCA 
GCCATGATCG GCTGGTTCGG TACGGCGATG TTGTGTTACG TAACACCGAA AGAACACTTA 
GGACTACCGA ATAAAAAAGA TGTGAAGGAT GGGGTAATGG CGTATAAGAT CGCGGCACAC 
GCTGCCGATC TTGCGAAAGG CCATCCGGGC GCACAAAACA GAGATAACGC ATTAAGCAAA 
GCACGTTTCG AATTCCGCTG GGCAGATCAG TTCAACCTGT CGCTTGACCC GGATACGGCG 
CGTGAGTTCC ACGATGAAAC ACTGCCGGCT GAAGGCGCGA AGATCGCACA CTTCTGCTCG 
ATGTGCGGAC CGCATTTCTG TTCGATGAAA ATCACACAGG AAGTACGTGA CTATGCAGAA 
GCAAACGGCT TAAACGACGG AGCGATCCTG GAAGAAGGTA TGAAAGCGAA GTCGGAAGAG 
TTTAAGAAAG TGGGCGGAGA TCTGTACGTG TAA 

 

Protein sequence

MTTENTNMAP QITREPLTGS QKIYVSGTMH PSVKVAMREI KLEDTVIHTG LKGAAEKRQK 
NPSVTVYDTS GPYTDPSIDI DIRKGLPRLR EQWILERGDV EEQKESFSEY TQKRNNDPSL 
DHLRFDHLKQ PLRAKPGQNV SQMHYARKGI ITPEMEYIAI RENNRIQELQ ASGDSIKSLW 
DQHEGHSFGA AIPKVITPEF VREEVARGRA IIPSNINHPE SEPMIIGRNF LVKINTNIGN 
SAVTSSIEEE VEKAVWSCRW GGDTLMDLST GKNIHETREW IIRNCPVPVG TVPIYQALEK 
VNGKAEDLTW EIFRDTLIEQ AEQGVDYFTI HAGVLLRYIP STAKRVTGIV SRGGSIMAKW 
CLSHHKENFL YTHFEEICEI MKAYDVAFSL GDGLRPGCLA DANDEAQFSE LKTLGELTEI 
AWKHDVQVMV EGPGHVPMHM IKENMDKQLK ECHEAPFYTL GPLTTDIAPG YDHITSAIGA 
AMIGWFGTAM LCYVTPKEHL GLPNKKDVKD GVMAYKIAAH AADLAKGHPG AQNRDNALSK 
ARFEFRWADQ FNLSLDPDTA REFHDETLPA EGAKIAHFCS MCGPHFCSMK ITQEVRDYAE 
ANGLNDGAIL EEGMKAKSEE FKKVGGDLYV