Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_0223 |
Symbol | atoS |
ID | 4185524 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 272394 |
End bp | 274361 |
Gene Length | 1968 bp |
Protein Length | 655 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 638070232 |
Product | sensor histidine kinase |
Protein accession | YP_676854 |
Protein GI | 110636648 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.142406 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0289163 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAA TACATACCAG CTGCCGTAAC CAATTCTTCT ATTATATTAA GAAAAACTTA ATACCAAAAA TCTTTTTATC TGCTTTATTT ATTTTTGTTT CAAGCATCTA TACATACGCG CAGAATTCAT TGGAGCTTAA AGATGCGCCC TTATCTTACC CATTAAGAAG CGGCTTGATC CACGTGTTTG AAGATACAGA CAACAGCTGT ACTTCTGTTG AAAGTGTTCA AACAAAAACA TTCCGACCGG CAAATTCTTA TTTCTTTTCA ACACCAAACC CTTCTTCTAC TTATTGGGGA AAATTCATTC TTACAGATAA TTCATCCATT AACAATCACT GGTTTTTTAT TTCTTATAAT TACAGTATTG ATTCCCTCGA CATTTTTGCA TTCAAAAAAT CAACGCTGCA GTTCCATAAA AAATACCGCT TTGGTTCTCC AAACGAAACC ACAAAAGAAA TTCGTCATAA AAATTTCACC GTTGATTTTC CTGTCTCAAA AAATGATACG TTAACCGTAT ATATTAAATT AAAAAATAAA AACGCGACAC AATATGACTT TGCCCTTGTA GAACATAAAG ATCTTTTTTC AAAAAGCGTT TTTGAATTTT ATCTTTTCGG TCTCTTTTAT GGCGGACTGA TCATGATGGC TTTTTACCAC ATCAGCGTTT ATTTTAGTTT AAAAGACAAA GCCTATATTT TTTATTCTAT CTATATTATA TTTCAGGGGC TTTATATGAG TTACCGGGAT TCTACAGCAT TGGTAAACTT ATTTACCGAT TCGCCCTGGC TTATTGATTA TACATTAAAT ATTTTATTCT TTCTGCTATC ATTTTCTTCT TTACTATATG GACGCTTCTT CCTTGAACTG AATAGCTTCA AGTGGTATAA CATACTTACA GTTGCATTTG TCGTTATCCG TTTCCCGTTT GTATGTATAT ATCACAATTA TCCGCTTGCG CTTATGTGGT TTGATCTGGC GGCGCCGGTA ATTGTTTTTT TATTTTCTAT CATTTCACGT TTTGAAAAAA ACAAAACTGC ATCCTTATTC AGCATTGGTT TTTTTGCCAT ATGTATCGGA TATCTGATTA ATGTATTGTG GCATGCCAAT ATCATCGATT GTACAACGGA TGTATTCTAT TCGCTTTACT ATACCATTAT CATCCAATCG TTGCTGCTTG CCATTGCGAA TGCCTACCGC CTCAATAAAC TAAAGGCTGA TGCACTGAAT AAAAAAATGC TGGAAGAGAA AGTTATTGAA AACAGCCGCA TGATTAAATA TCAGGAAGAA TTAATCAAGG AAAAAACAAA TGACCTGGAT ATGCTTTTAT ACAGAGCTTC TCACGATATC AAAGGTCCCC TGAAATCAAT TAACGGCTTA TGCGATCTGG GCCAGCGCGA CAATGAGAAT AAAAATATTT ATTTCGAACA TATTGATCTT GTTTCAAAAA GACTGCAGAA TATTTTGAAT GCCCTTTTGC AGATTGCAGA ACACAATCGT TCTGAAGTTA AAAAAGAACC TGTTTATATT CGTACGTTAA TACAGGAATG CGTACAGGAA AACCTGGTTG CTTATCCGGA TATCAAAAAA ATCACCTTTA AGATAGATGT TCCGGAAGAT GCGGTGATCA ACTCCGAACG GTTCACCTTA CTTTCTATCA TACAAAACAT TATTGAGAAT GCGATTAAGT ACATGGACAA GTCGAAAGCA GAAAATCATG TATCTATAAG TTTTAATCAA TCTGCCACTG AACATACGTT AATTTTTGAA GACAACGGAA TTGGAATTAA CGAAGTGTAT CTGAAAAACA TTTTTCAAAT GTTTTACCGT GCAAACAATG TAAATCCTGC CGGTGTGGGG CTTGGGCTTT ATATAGTAAA ACAGCATATT GACCGCTTAA AGGGGCACAT AGATATTGCT TCTAAAGAAC ATGAATTTAC GCGGTTTACG ATCCGCTTAC CCAGATAA
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Protein sequence | MKKIHTSCRN QFFYYIKKNL IPKIFLSALF IFVSSIYTYA QNSLELKDAP LSYPLRSGLI HVFEDTDNSC TSVESVQTKT FRPANSYFFS TPNPSSTYWG KFILTDNSSI NNHWFFISYN YSIDSLDIFA FKKSTLQFHK KYRFGSPNET TKEIRHKNFT VDFPVSKNDT LTVYIKLKNK NATQYDFALV EHKDLFSKSV FEFYLFGLFY GGLIMMAFYH ISVYFSLKDK AYIFYSIYII FQGLYMSYRD STALVNLFTD SPWLIDYTLN ILFFLLSFSS LLYGRFFLEL NSFKWYNILT VAFVVIRFPF VCIYHNYPLA LMWFDLAAPV IVFLFSIISR FEKNKTASLF SIGFFAICIG YLINVLWHAN IIDCTTDVFY SLYYTIIIQS LLLAIANAYR LNKLKADALN KKMLEEKVIE NSRMIKYQEE LIKEKTNDLD MLLYRASHDI KGPLKSINGL CDLGQRDNEN KNIYFEHIDL VSKRLQNILN ALLQIAEHNR SEVKKEPVYI RTLIQECVQE NLVAYPDIKK ITFKIDVPED AVINSERFTL LSIIQNIIEN AIKYMDKSKA ENHVSISFNQ SATEHTLIFE DNGIGINEVY LKNIFQMFYR ANNVNPAGVG LGLYIVKQHI DRLKGHIDIA SKEHEFTRFT IRLPR
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