| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CCC13826_1041 |
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| Symbol | truD |
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| ID | 5597553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter concisus 13826 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009802 |
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| Strand | + |
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| Start bp | 840044 |
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| End bp | 841168 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640929406 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_001466702 |
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| Protein GI | 157164757 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0766791 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGAAG CCACCACTTT TAAGCCGCTC TATGCGCTAA CTCATGCGCC CATCGAGGCA
TATTTTTCTA AAAATTCAGA TGATTTTGTC GTGCGCGAGA TACCGCTTTA TGAATTTAGT
GGCGACGGCG AGCACTTGAT CGTTGAAATT TCTAAAAAAG ATATGACGAC AAGCGACGCT
TTGCACGCCT TAAGCGAGGT TACAGGGGCT AAGATGCGCG ACTTTGGCTA TGCTGGACTA
AAGGATAAAC AGGGCATGAC GACGCAGTTT ATCTCGATGC CTCGTAAATT TGAGAGCGCG
CTTGCAAACT TTAGCCATGA AAAGATGAAA ATTTTAAATT TAAACGTGCA TAAAAACAAG
CTTCGCATCG GACATCTAAA GGGCAATAGC TTTTTCATCC GCCTAAAAAA GGTGCTGCCA
AGTAGCGCTA AAAAGCTCGA GCAGGCCTTT GTCAGCATCG ATAAAATGGG CTATGCAAAC
TACTTTGGCT ATCAGCGCTT TGGCAAATTT GGCGACAATG CTGAAACTGG GCTGGAGCTA
CTTAAAAATG GCACGATAAA TGGCAAAAAG AGCAAAAATG TAAAGCTAAA TGACTTTTTG
ATCTCAGCCT ATCAAAGCGA TCTTTTTAAC CGCTATCTTA GCAAAAGGGT TGAAATTTCA
AGGTTTGTGA GTGACTTTAG CCTAAGTGAG CTGGGTGAAA TTTATAAAAA CTTTAGCAAA
AACGATATAA AGGCGATGAA GGCGCAGGAG AGCTTTTTTA AGCTTTTGCC AGGAGAGGTT
TTGGGGCACT ATCCATTTGG CAAGCTCTTT TTGTGCGAAA ATTTAGATCA AGAGGCGCAA
AGATTTGCTA AGCGTGATAT CACAAGCCTC GGACTTATAG TCGGTGCAAA GGCCTATGAG
GCAAGCGGCA TGGCAAAAGA GCTTGAGGAT GAAATTTTCG CTGAGGCATT TTCGCTTACT
TCAAAGATCA CTGGCTCAAG GCGCTTTAAC TGGGCGTATC TTGAAAATAC AAGCTACAAA
TACAACGAAG AAAACGCTCA TTTTAGCTTA AATTTCACAC TTCAAAAGGG CTCATACGCC
ACAGTTGTGT TAGAAGAAAT TTTGCATAAA AATATATTTG AGTAG
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| Protein sequence | MQEATTFKPL YALTHAPIEA YFSKNSDDFV VREIPLYEFS GDGEHLIVEI SKKDMTTSDA
LHALSEVTGA KMRDFGYAGL KDKQGMTTQF ISMPRKFESA LANFSHEKMK ILNLNVHKNK
LRIGHLKGNS FFIRLKKVLP SSAKKLEQAF VSIDKMGYAN YFGYQRFGKF GDNAETGLEL
LKNGTINGKK SKNVKLNDFL ISAYQSDLFN RYLSKRVEIS RFVSDFSLSE LGEIYKNFSK
NDIKAMKAQE SFFKLLPGEV LGHYPFGKLF LCENLDQEAQ RFAKRDITSL GLIVGAKAYE
ASGMAKELED EIFAEAFSLT SKITGSRRFN WAYLENTSYK YNEENAHFSL NFTLQKGSYA
TVVLEEILHK NIFE
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