| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_B1152 |
|---|
| Symbol | |
|---|
| ID | 4008359 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007952 |
|---|
| Strand | + |
|---|
| Start bp | 2100607 |
|---|
| End bp | 2102610 |
|---|
| Gene Length | 2004 bp |
|---|
| Protein Length | 667 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637951534 |
|---|
| Product | RNase II stability modulator |
|---|
| Protein accession | YP_554154 |
|---|
| Protein GI | 91778946 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.584939 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGACG ACCAACACGA CCAGGTGCTT TTTGCGCAGT TCGGCACAAG CAGCCCATGC
TGGCGTCTGT CGAACGACAG CAACGCGCTC GAACTCACGC CCGTGACCGG CGACGTGCCC
GCCAATGTCG CCATTCCGCT GAATCCTCAA CAAGCCTCGC AAATCCGCTG CCTCACCGGC
GTCACCTCGC ATCTCGTGCT CGACGTGCGG CTATTCGGCG AACCGTTGCG TCTGCACCTG
GTGGGTAAAA AGCTCACCAG CAACTCCTGG GCCGGCACCG CCTCGGCCTA TGACGACACC
GAGTCCGTCG CGCGCGATCT GGTCCACGGT CTTTCGTTCG CCGAACAGGT TGTCTCCGAA
GTGAATTCGG TCGTCGTGAT CCTCGACCGG CACGGCCGGA TACAGCGCTT CAACCGGCTC
GCGGAAGAAC TCACCGGCGT CAAGGAAGAG AACATCATCG GCCGCAACGT GTGGGCGCTG
TTCATGTCTA CTGAAGATGG CGCGGCGTCC AGTCAGAACA TTGCGGGCTT CTTCAATCGC
GGCGTGTCGT ACGAAGTCGA GCGGCGCATC AAAACGGTGC ACGGCGAACG GCTCTTTCTG
TTTCGCAACA AGTTCGTTCA CAGCGGCAGC GGCGTCGAAG AACAGTTCCT GATCTGCTCA
GGCACGGACA TCACCGAAGA ACGGCTCGCG CAGGAACGCC TCACCGAACT CGCGAACACC
GACTCGCTCA CCGGCCTCGC GAACCGCAAC GCGATCCAGG ACAGGATCCG CGCCGCCATT
GAAGACGCCA CGCCGGGCGA AGCGGTCGGC GTGCTGTTCC TCGACCTCGA CAACTTCAAG
AAGGTCAACG ATCACTACGG CCACGTCTTC GGCGACCGCC TGATTCGCGA CGTATCGTCG
GCCATCAGCC TCTGTCTGAA CGAAGGCGAT ACGCTCGCGC GACTCGGCGG CGACGAATTC
ATCGTGCTCG CGGCCAGGGG CACGGCGCAT GAACTCGAAG TCACCGCGCA GCGCATTCTC
GAACGCATGC GCACACCCTT CAGCCTCGGG CTCGTGGAGG TCTACACGGG CTGCTCGATC
GGCATCGCGC GGTATCCGGA ACACGGCGAC AGCCTCGAAT CGCTGATCCG TTCAGCGGAC
ACCGCCATGT ACGTCGCCAA AGACGAAGGC AAGCGTACGC ACCGCGTGTT CTCGCCGGAG
ATGAACCGCA AGGTCGCCGA GTACATGTGG CTCGACACCA ACCTGCGGCG CGGCCTCGAT
GAAGGCCAAC TGACACTGCA TTACCAGCCG AAACTGTCGC TCGCCACCGG CGTGGTCCAG
GGCGCCGAGG CGCTGGTGCG CTGGAATTCG CCGGAGCGCG GGCAGATCAT GCCCACCAAG
TTCATCCGTT ATGCAGAAGA GTCGGGTCTG ATTGGCGTGC TGGGCCGCTG GGTCATGGAA
ACGGCCGCGA AACAGGCCGC CAAATGGAAA GCGGACGGCT ACAACCTGCG CATCGCGATC
AACGTGTCGG CGCGGCAACT CGTCGACACG GCGGTGGTCC GCCATTTCAG CGAGGCGCTC
CAGCATGCGA ACCTCGACCC CTGTCTGATC GATCTCGAAC TGACCGAGAG TTGCCTGATC
GAAGACGAAA CGGCCGCGAT CGATCTGATC AAGCAATTCC GCCAGCTCGG CGCTCAGGTT
CATCTGGATG ACTTCGGCAC GGGTTATTCG TCGCTGTCGC AACTCGGCCG TATTCCGCTC
GACGTGATCA AGCTCGATCG CAGCTTCGTT CGCTCGATCA ACGCCGACCC CAAAGCGCAA
GCGCTGGTGC GCTCAATGGT GGTCGTCGCG CAGGAGCTGA ATTTCAAGGT GGTTGCCGAA
GGGATCGAAA CCGAGTCGGA AGAATTGTTC ATGAGGGGTC TGGGCGTCGA TTACGTGCAG
GGTTTTCTGT ACGGCCAGGC CATGCCGGCG GCTGAATTCG AGCGCTGGTT GCAGGATAGA
CAGAAGCTCA GACTGATTGC CTGA
|
|---|
| Protein sequence | MNDDQHDQVL FAQFGTSSPC WRLSNDSNAL ELTPVTGDVP ANVAIPLNPQ QASQIRCLTG
VTSHLVLDVR LFGEPLRLHL VGKKLTSNSW AGTASAYDDT ESVARDLVHG LSFAEQVVSE
VNSVVVILDR HGRIQRFNRL AEELTGVKEE NIIGRNVWAL FMSTEDGAAS SQNIAGFFNR
GVSYEVERRI KTVHGERLFL FRNKFVHSGS GVEEQFLICS GTDITEERLA QERLTELANT
DSLTGLANRN AIQDRIRAAI EDATPGEAVG VLFLDLDNFK KVNDHYGHVF GDRLIRDVSS
AISLCLNEGD TLARLGGDEF IVLAARGTAH ELEVTAQRIL ERMRTPFSLG LVEVYTGCSI
GIARYPEHGD SLESLIRSAD TAMYVAKDEG KRTHRVFSPE MNRKVAEYMW LDTNLRRGLD
EGQLTLHYQP KLSLATGVVQ GAEALVRWNS PERGQIMPTK FIRYAEESGL IGVLGRWVME
TAAKQAAKWK ADGYNLRIAI NVSARQLVDT AVVRHFSEAL QHANLDPCLI DLELTESCLI
EDETAAIDLI KQFRQLGAQV HLDDFGTGYS SLSQLGRIPL DVIKLDRSFV RSINADPKAQ
ALVRSMVVVA QELNFKVVAE GIETESEELF MRGLGVDYVQ GFLYGQAMPA AEFERWLQDR
QKLRLIA
|
|---|
| |