| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A0166 |
|---|
| Symbol | fliF |
|---|
| ID | 4006261 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007951 |
|---|
| Strand | + |
|---|
| Start bp | 4670292 |
|---|
| End bp | 4672094 |
|---|
| Gene Length | 1803 bp |
|---|
| Protein Length | 600 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637949478 |
|---|
| Product | flagellar MS-ring protein |
|---|
| Protein accession | YP_560817 |
|---|
| Protein GI | 91785611 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
|---|
| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.710453 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTCGT CAGCCAACTC TTTGATCAAC CCCGACGCCC GCATGGGCCT CGCCGGCGCG
CAGCCTGGCG CCGGTGCGGC CGGCGCCGGC CAGGCCGGCG GCGCGGACCT GGGTGGCCTG
TCGGGCGGTC TCGGCGGCAA TTTCGGTCAG CGCCTGTCAG GCCTCGCGCA AATGCGCGGC
AACCCGCGCG CCCCGTTGAT TTTCGCAGTC GCGCTGCTGG TCGCCGTGGT GGCGGGCCTG
TTCCTGTGGT CGCGGGCGCC GGACTACAAG GTGCTCTACA GCAATCTGTC GGACCGCGAC
GGCGGCGCCA TCATCACCGC GTTGCAGGCG GCCAACATTC CCTACAAGTT CTCCGACGCG
GGCGGGGCGA TCCTCGTGCC GGCCGAGCAG GTGCATGAAA TGCGGCTGCG CCTCGCGTCG
CAGGGGTTGC CCAAGAGCGG CTCGGTCGGC TTCGAACTGA TGGACAACCA GAAGTTCGGC
ATCAGCCAGT TCGCCGAGCA GATCAACTAT CAGCGCGCAC TGGAAGGCGA ACTGGAGCGC
ACGGTCGAAT CGATTTCGTC GGTGAAATCG GCCCGCGTGC ATCTGGCGAT TCCGAAGCCC
TCCGTATTCG TGCGCGACAA GGAAGCGCCG TCCGCCTCCG TGCTGGTCAA CCTTTACCCG
GGCCGCGCGC TCGACGAAGG CCAGGTGCTG GCGATCACGC ATATGGTCTC CTCGGCGGTG
CCGGATATGC CGGTGAAGGG CGTGACCATT CTCGACCAGG ACGGCAATCT GCTCACGCAG
CCGTCCACCG GCAGCGGCCT CGACGCTTCG CAACTGAAAT ACCGCCAGCA GATCGAGCGC
AGCACCCAGC AGCGCATCGA CGCGATCCTC GCGCCGCTGT TCGGCTCGGG CAACGCGCAT
TCGCAAGTGA GCGCCGACAT CGACTTCTCG CGCAGCGAGC AGACCTCGGA AAACTACGGC
CCGAACGGCA ACCCACAACA GGCGGCGATC CGCAGCCAGC AGTCGAGCAG CGCCACCGAA
ATGTCGCAAG GCGGCGCCTC GGGCGTGCCG GGCGCGCTGT CGAACCAGCC GCCGCAGCCG
GCTTCGGCGC CGATCAACGC GCCGACCGGC GCGAGCGGCG TGACGACCAC GCCGGTCAGC
GACCGCAAGG ATTCGACCAC CAACTACGAA CTCGACAAGA CCGTACGGCA CCTCGAACGG
CCGATGGGCG GCATCAAGCG TCTGTCGGTG GCGGTGGTGG TGAATTACCT GCGGGTGGTC
GACGCCAAGG GTCATGCCAC CATGCAGCCG GTCACCGCCG ACAAGCTCGC GCAGGTCAAT
CAGCTGGTCA AGGACGCGAT GGGCTTCGAT GCCGCGCGCG GCGACTCGGT CAACGTGGTC
AACAGTCCGT TCACCACCGA CCTCGACCCG AACGCCGACC TGCCGTGGTG GCGCACGCCG
GACATGATCG CGCTCGCCAG GCAGGTCGCC ACTTACCTCG GCATCGGCGC GGTCGCCCTG
TTCCTTTACT TCGTGATGGT GAAGCCGGCG CTGCGCCGCG CCTTCCCGCC GCCGGAGCCG
GTGGTCGCCG GGGCGCTGCC GTCGCCGGAC GAGCCGATCC TGCTGGATGG CATTCCCGCC
GCCGAGCGCG CGGGCGCGGG CGGAAGTTCG GTCGCCGAAC TGGAATCCGA CAGCGAACTG
CTCGCGCTCG AAAACTCCAA GCACAAATAT GAGCGGAACC TGGAATTCGC GCGCAACATC
GCGCGCCAGG ATCCGAAGAT CGTCGCAACC GTCGTGAAAA ATTGGGTGTC CGATGAGCGC
TGA
|
|---|
| Protein sequence | MDSSANSLIN PDARMGLAGA QPGAGAAGAG QAGGADLGGL SGGLGGNFGQ RLSGLAQMRG
NPRAPLIFAV ALLVAVVAGL FLWSRAPDYK VLYSNLSDRD GGAIITALQA ANIPYKFSDA
GGAILVPAEQ VHEMRLRLAS QGLPKSGSVG FELMDNQKFG ISQFAEQINY QRALEGELER
TVESISSVKS ARVHLAIPKP SVFVRDKEAP SASVLVNLYP GRALDEGQVL AITHMVSSAV
PDMPVKGVTI LDQDGNLLTQ PSTGSGLDAS QLKYRQQIER STQQRIDAIL APLFGSGNAH
SQVSADIDFS RSEQTSENYG PNGNPQQAAI RSQQSSSATE MSQGGASGVP GALSNQPPQP
ASAPINAPTG ASGVTTTPVS DRKDSTTNYE LDKTVRHLER PMGGIKRLSV AVVVNYLRVV
DAKGHATMQP VTADKLAQVN QLVKDAMGFD AARGDSVNVV NSPFTTDLDP NADLPWWRTP
DMIALARQVA TYLGIGAVAL FLYFVMVKPA LRRAFPPPEP VVAGALPSPD EPILLDGIPA
AERAGAGGSS VAELESDSEL LALENSKHKY ERNLEFARNI ARQDPKIVAT VVKNWVSDER
|
|---|
| |