| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4518 |
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| Symbol | |
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| ID | 4012793 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | - |
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| Start bp | 4775295 |
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| End bp | 4777196 |
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| Gene Length | 1902 bp |
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| Protein Length | 633 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637944170 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_551302 |
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| Protein GI | 91790350 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.543638 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCAACAAG CGATTACTTT TGAGCCGAAC CTCTACGCTC CCGAACGCAT CTGGCAAGCG
CGTCGGGCCT TCTTTGACGA CGGCAGCGCG CCTGCGGGCC TGATTGACGA CCCAGTGCTG
CGTTCATGGC AACGCTGCCG GGGTCAGGGT CGCGGCGCCT CGGAACAGGT GGAATTCGAT
CCCGTGGACC GTCTCGCACT GGCCCGTTTG CTGGAGGCCC AGCGCACATT GCTGGAGGCG
GCACGCCCCG AGCTGGATGC GCTCGCCCGC GCGGTGTCGG ACGCCGGCTA TGCCGTGCTG
CTGACCGATG TCCAGGGACG AGCCTTGGCG GTCGAGGGTT GCACCGACCG CCGTAGCGAG
CCGCTACGGC AAGCCTTTCG TCCCGGGGTA GACCTGTCTG AGGCGGTGAT TGGCACCAAC
GCGATGTCGT CGGCGATGAC CGAGCAGCGG GTGGTCCGCG TGCTCGGGCC CGAGCATTTT
TTTGCCGACA ACCAGATCTT TCACTGTTGC GCTGCACCCG TGTTTGACCC GCAGGGGCGC
GTGGTCGGCG CGGTTGATAT CTCGCGCGAC ATGCCGGGCC TGGCGGCCGG TGCCGTGGCG
TTGACCCAGC GCTGCGCCCG CCGCATCGAG CGCAAGCTTT TCGAGGCGCT CCCGGCATTC
GTGCGGCTGC GGCTGGAGAC GCAGGATGCG AGCGATGAAG CCTGGCTCGC CTTCAACCGC
GATGGCGGCC TGCTGGCGGC CAACATCGCC GCGCGCCATC TGATCGATGT CCCTTTCGTT
CCGCAGGGGC TGGGCTTCAG CGACCTGTTT GACGGCCGTT TCGATACGCT CGCCGCTGCG
GCAAGCCAGG CGAGCGGCGA ACTGAGCCTG CGTCTGCGTG GCGGGGTGCA GCTGCGCGCC
CGCGCCTCGG GCGTGCCGCC CATGGCGCGA TCCGTTGCCA CGCCCAACCG TTCAGCGCCG
CCGCGCACCG CGCCGAGGCC TGAGTTCGGC GATGTGTCCT TTGCCGCCGA CTTTGAACGC
GCGCTGCGCG CCTTCAATGC CGGTTTGCCG GTTTTGGTAA CGGGCGAAAC CGGTGCTGGC
AAGGAAGTCG CAGCCCGCGC CCTGCACGAA GTGAGTCATC GCCACGACGG CCCGTTAATA
GCGATCAACT GCGGCGCCAT CGCTCCCCAG TTGATGGCCG CCGAGCTGTT CGGCCATGTC
GAAGGCGCCT TCACTGGCGC CCGGCGTGGC GGCAGCGCCG GCAAAATCGA AGCGGCCCAA
GGCGGCACCT TGCTGCTTGA CGAAATCGGC GACATGCCGC TTGAGTTGCA GGTCGGCCTG
CTGCGCATGC TCGACAGTGG CGAAGTCCTG CGCGTCGGTG CGACCCGGGC GGTGCGGGTG
GACGTGCGCT TCGTCTGCGC GACCCACCGC GATCTGCGCG CGCTGGTGGC TTCGGGGCTC
TTTCGCGAGG ATCTCTATTA CCGCATCAGT GGTTTTCAGT TGCAGATACC ACCGCTACGC
ATGAGAAGTG ATTTCAACGC AGTCCTTGAC GCCTTGCTGG CGGAGCAGGG CTGCGCGCCG
CGGCTGCTCG ACGCCGGGCT GCGCCGGGCG CTAAAAAGCA GACGCTGGCC GGGCAACGTG
CGCCAATTGC GCCATGCGCT TCGACTGGCA CTGGCGCTGC TGGAAGCCGA TGAAGCGCTC
ACCCTGAGTC ATTTTCCCGA CCATGAACCC GACCATGAAT CCAGCCTGGG AGTGCCTTCT
GCTCGTCCGC GCACCGGTGC ACCCGACGAC GGGTTGAGTT GGCGGCAGAC GCAACAGCAG
GCCATCGATG CGGCGCTGCG GCAAACCGGC GGCAACGTCA CCGCCGCGGC TGCCTTGCTT
AATATCGGTC GCGCAACGCT CTACCGCAAG CTGGCGAAAT GA
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| Protein sequence | MQQAITFEPN LYAPERIWQA RRAFFDDGSA PAGLIDDPVL RSWQRCRGQG RGASEQVEFD
PVDRLALARL LEAQRTLLEA ARPELDALAR AVSDAGYAVL LTDVQGRALA VEGCTDRRSE
PLRQAFRPGV DLSEAVIGTN AMSSAMTEQR VVRVLGPEHF FADNQIFHCC AAPVFDPQGR
VVGAVDISRD MPGLAAGAVA LTQRCARRIE RKLFEALPAF VRLRLETQDA SDEAWLAFNR
DGGLLAANIA ARHLIDVPFV PQGLGFSDLF DGRFDTLAAA ASQASGELSL RLRGGVQLRA
RASGVPPMAR SVATPNRSAP PRTAPRPEFG DVSFAADFER ALRAFNAGLP VLVTGETGAG
KEVAARALHE VSHRHDGPLI AINCGAIAPQ LMAAELFGHV EGAFTGARRG GSAGKIEAAQ
GGTLLLDEIG DMPLELQVGL LRMLDSGEVL RVGATRAVRV DVRFVCATHR DLRALVASGL
FREDLYYRIS GFQLQIPPLR MRSDFNAVLD ALLAEQGCAP RLLDAGLRRA LKSRRWPGNV
RQLRHALRLA LALLEADEAL TLSHFPDHEP DHESSLGVPS ARPRTGAPDD GLSWRQTQQQ
AIDAALRQTG GNVTAAAALL NIGRATLYRK LAK
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