| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4442 |
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| Symbol | rpoB |
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| ID | 4012898 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | - |
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| Start bp | 4694415 |
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| End bp | 4698527 |
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| Gene Length | 4113 bp |
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| Protein Length | 1370 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637944091 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_551227 |
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| Protein GI | 91790275 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCTATT CCTATACCGA ACGCAAACGC ATCCGCAAAA GCTTCGGCAA CCGCGAGAGC
GTGTTGACTG TTCCCTATTT GCTGCAAATG CAGAAAGACG CGTACACGGC GTTCCTGCAA
GCCGATCGTG CGCCCCAGAA GCGCACTGTA GAAGGTCTGC AGGCAGCGTT TGAAAACGCA
TTTCCCATCG TCTCGCACAA CGGTTTTGTC GAGATGAAAT TCATCGAATA CAACCTGGCC
AAGCCCGCCT TCGACGTGCG CGAATGCCAG ACCCGTGGAC TGACCTTTGC ATCGGCCGTC
CGCGCCAAAG TCCAGCTGAT CATCTATGAC CGCGAGTCAT CCACATCGCA GTCCAAGGTC
GTCAAGGAGG TCAAGGAGCA GGAAGTCTAC ATGGGCGAAG TGCCGCTCAT GACCGACAAG
GGCTCTTTCG TCATCAACGG GACCGAGCGC GTGATCGTGT CCCAGCTGCA CCGCTCCCCT
GGCGTGTTCT TTGAACACGA CAAGGGCAAA ACCCACAGCT CGGGCAAACT GCTGTTCTCG
GCCCGCATCA TTCCCTATCG CGGCTCCTGG CTCGACTTCG AGTTCGACCC GAAAGACGTG
CTGTACTTCC GTGTCGACCG TCGCCGCAAG ATGCCGGTCA CGATCCTGCT CAAGGCCATC
GGCCTGAACC CGGAATCCAT CCTCGCCAAC TTCTTCGTGT TCGACCACTT CCGCCTGATG
GACAGCGGCG CGCAGATGGA GTTTGTCGCC GAGCGCATGC GTGGCGAAGT GGCCCGTTTC
GACATTACCG ACAAGAGCGG CAAGGTCGTC GTGGCCAAAG ACAAGCGCAT CACGGTTCGC
CATACCCGCG AGCTGGAGCA AAGCGGCACC ACCACCATCA GCGTACCTGA AGACTTCCTG
GTCGGCCGTG TGGTCGCCAA GAACATCGTC GACGCCGAAA CCGGCGAAAT CATCGCCAAG
GCCAACGACG AGCTGACCGA ACTGCTGCTG AAAAAGCTGC GCCTGGCCGG CGTGCAGGAC
CTGCAGGTGC TGTACACCAA CGAACTCGAC CAGGGGGCCT ACATTTCGCA AACCCTGCGC
GCCGATGAAA CGGCTGACGA GTTTGCGGCC CGCGTGGCCA TCTACCGCAT GATGCGTCCC
GGCGAGCCGC CGACGGAAGA CGCTGTGCAG GCACTGTTCC AGCGCCTGTT CTACAACCCG
GACACCTACG ACCTGTCCAA GGTCGGCCGC ATGAAGTTCA ACGCCCGCGT GGGCCGTGAC
GACTCCACCG GCCCCATGGT CATGACCAAC GAGGACATCC TCGCGGTCGT CAAGATCCTG
GTGGACCTGC GCAACGGCAA CGGCGAAGTC GACGACATTG ACCACCTCGG CAACCGCCGT
GTGCGCTGCG TCGGCGAACT CGCGGAAAAC CAGTACCGCA CCGGTCTGGC CCGTATCGAG
AAGGCCGTGA AAGAGCGTCT GGGCCAGGCG GAGCAAGAGC CGCTGATGCC GCATGACCTG
ATCAACAGCA AGCCGATTTC CGCCGCCCTG AAGGAATTCT TCGGTGCGTC GCAGCTGTCG
CAGTTCATGG ACCAGACCAA CCCGCTGTCC GAGATCACCC ACAAGCGCCG TGTTTCGGCC
CTTGGCCCCG GTGGCTTGAC CCGCGAGCGC GCCGGCTTCG AAGTGCGGGA CGTGCACGTG
ACCCATTACG GCCGCGTCTG CCCGATTGAA ACGCCTGAAG GTCCGAACAT CGGCCTGATC
AACTCGCTGG CCCTGTATGC CCGCCTCAAC GAGTACGGTT TCATCGAAAC ACCGTACCGC
CGTGTGGTGG ACAGCAAGAT CACCGACCAG ATCGATTACC TGTCGGCCAT TGAGGAAGGC
AAGTACGTGA TTGCCCAGGC CAACGCACTG CTCGATGATT CCGGCACACT GACCGGCGAC
CTCGTGTCAG CGCGCGAGAA CGGCGAATCC GTGCTGGTCG GCGCAGAGCG CATCCAGTAC
ATGGACGTGT CGCCCGCGCA GATCGTCTCG GTGGCCGCCT CGCTCGTGCC CTTCCTGGAG
CACGATGACG CCAACCGCGC ACTGATGGGT GCCAACATGC AGCGCCAGGC CGTGCCTGTG
CTGCGCCCTG AAAAAGCCTT TGTCGGTACT GGCATCGAGC GCGTGTCCGC AGTGGACTCC
GGCACGGTGG TGACGGCCAA CCGCGGCGGT GTGGTCGATT ACGTCGATGC CACCCGCATC
GTGGTGCGTG TCAATGATGC GGAAGCCCTC GCCGGCGAAG TCGGTGTGGA CATCTACAAC
CTGATCAAGT ACCAGCGTTC CAACCAGAAC ACCAACATCC ATCAGCGCCC CATCGTCAAG
ATCGGCGACA AGCTGGCCAA GGGCGACGTG ATCGCCGACG GAGCATCGAC GGACATCGGC
GAGCTGGCCC TGGGCCAGAA CATGCTGGTG GCGTTCATGC CCTGGAACGG CTATAACTTC
GAGGATTCGA TCCTGATTTC CGAGCGCGTG GTGGCCGAAG ACCGCTACAC CTCGATTCAC
ATCGAAGAAC TCGTGGTGAT GGCGCGTGAC ACCAAGCTGG GCTCTGAAGA GATCACCCGC
GACATCCCGA ACCTGTCCGA GCAGCAGCTC AACCGTCTCG ACGAATCCGG CATTATTTAT
GTCGGCGCTG AAGTCCAGCC GGGCGACACC CTGGTGGGCA AGGTCACGCC AAAAGGCGAG
ACCACGCTGA CGCCGGAAGA AAAACTGCTG CGCGCCATCT TCGGCGAAAA AGCCAGCGAC
GTGAAAGACA CCTCGCTGCG CGTGAGCCAG GGTTCGCAAG GTACCGTGAT CGACGTGCAG
GTCTTCACTC GCGAAGGCAT TGTGCGCGAC AAGCGCGCCC AGCAGATCAT TGACGACGAG
CTCAAGCGTT TCCGCCTGGA CCTGAACGAC CAGCTGCGCA TTGTGGAAGC CGATGCATTT
GACCGCATCG AAAAGCTGCT GAATGGCAAG GTTGCCAACG GCGGCCCGAA AAAGCTGGCC
AAAGGCACCA AGATCGACAA GGCCTACCTG GCCGACGTCG AGAAGTACCA CTGGTTCGAC
ATCCGCCCGG CGGACGACGA AGTGGCTTCG CAGCTGGAAA GCATCAAGAA CGCGATGGAG
CAGACGCGCC ACAGCTTCGA CCTGGCTTTC GAAGAGAAGC GCAAAAAGCT CACGCAGGGC
GACGAACTGC CGGCCGGCGT GCTCAAGATG GTCAAGGTCT ACCTGGCCGT CAAGCGCCGC
CTGCAGCCCG GCGACAAGAT GGCCGGTCGC CACGGCAACA AGGGCGTGGT GTCCAAGATC
GTTCCGGTCG AAGACATGCC CTACATGGCC GACGGCACGC CGTGCGACAT CGTGCTCAAC
CCGCTGGGCG TGCCTTCGCG CATGAACGTC GGCCAGGTGC TCGAGGTGCA TTTGGGCTGG
GCCGCCAAGG GTCTGGGCCA GCGCATCGGC GACATGCTGC AAGCCGAAGC CAAGGTGGCC
GAGCTGCGCA AGTTCATGGA CACCCTGTAC AACAAGTCGG GCCGCGTCGA GGACCTGGCC
AATCTGTCCG ATACCGATGT GCTCGAGATG GCCCGCAACC TGACGACCGG TGTTCCCTTT
GCGACGCCGG TGTTCGATGG CGCCTCGGAA GAGGACATCA TGACCATGCT GAAGCTGGCG
TATCCGGACG ACATCGCCAA GGCCAAGGGC CTGACGGCGA CGCGTACCCA GGCCCAGCTG
TATGACGGGC GCACCGGCGA CCAGTTCGAG CGCACGACGA CGGTCGGCTA CATGCACGTG
CTGAAGCTTC ACCACCTGGT GGACGACAAG ATGCACGCGC GCTCAACCGG ACCGTACTCC
CTGGTTACCC AGCAGCCGCT GGGCGGCAAG GCGCAGTTTG GTGGACAGCG TTTCGGCGAG
ATGGAGGTCT GGGCGCTGGA AGCCTATGGC GCTTCCTACA CGCTGCAGGA AATGCTCACC
GTCAAGTCCG ACGACGTGCA GGGCCGTACC AAGGTGTACG AGAGCATCGT CAAGGGCGAG
CACGCGATCA CGGCAGGCAT GCCCGAGTCG TTCAACGTGC TGGTCAAGGA GATCCGTTCG
CTCGGTATCG ACATCGAGCT GGAACGCAGC TAA
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| Protein sequence | MAYSYTERKR IRKSFGNRES VLTVPYLLQM QKDAYTAFLQ ADRAPQKRTV EGLQAAFENA
FPIVSHNGFV EMKFIEYNLA KPAFDVRECQ TRGLTFASAV RAKVQLIIYD RESSTSQSKV
VKEVKEQEVY MGEVPLMTDK GSFVINGTER VIVSQLHRSP GVFFEHDKGK THSSGKLLFS
ARIIPYRGSW LDFEFDPKDV LYFRVDRRRK MPVTILLKAI GLNPESILAN FFVFDHFRLM
DSGAQMEFVA ERMRGEVARF DITDKSGKVV VAKDKRITVR HTRELEQSGT TTISVPEDFL
VGRVVAKNIV DAETGEIIAK ANDELTELLL KKLRLAGVQD LQVLYTNELD QGAYISQTLR
ADETADEFAA RVAIYRMMRP GEPPTEDAVQ ALFQRLFYNP DTYDLSKVGR MKFNARVGRD
DSTGPMVMTN EDILAVVKIL VDLRNGNGEV DDIDHLGNRR VRCVGELAEN QYRTGLARIE
KAVKERLGQA EQEPLMPHDL INSKPISAAL KEFFGASQLS QFMDQTNPLS EITHKRRVSA
LGPGGLTRER AGFEVRDVHV THYGRVCPIE TPEGPNIGLI NSLALYARLN EYGFIETPYR
RVVDSKITDQ IDYLSAIEEG KYVIAQANAL LDDSGTLTGD LVSARENGES VLVGAERIQY
MDVSPAQIVS VAASLVPFLE HDDANRALMG ANMQRQAVPV LRPEKAFVGT GIERVSAVDS
GTVVTANRGG VVDYVDATRI VVRVNDAEAL AGEVGVDIYN LIKYQRSNQN TNIHQRPIVK
IGDKLAKGDV IADGASTDIG ELALGQNMLV AFMPWNGYNF EDSILISERV VAEDRYTSIH
IEELVVMARD TKLGSEEITR DIPNLSEQQL NRLDESGIIY VGAEVQPGDT LVGKVTPKGE
TTLTPEEKLL RAIFGEKASD VKDTSLRVSQ GSQGTVIDVQ VFTREGIVRD KRAQQIIDDE
LKRFRLDLND QLRIVEADAF DRIEKLLNGK VANGGPKKLA KGTKIDKAYL ADVEKYHWFD
IRPADDEVAS QLESIKNAME QTRHSFDLAF EEKRKKLTQG DELPAGVLKM VKVYLAVKRR
LQPGDKMAGR HGNKGVVSKI VPVEDMPYMA DGTPCDIVLN PLGVPSRMNV GQVLEVHLGW
AAKGLGQRIG DMLQAEAKVA ELRKFMDTLY NKSGRVEDLA NLSDTDVLEM ARNLTTGVPF
ATPVFDGASE EDIMTMLKLA YPDDIAKAKG LTATRTQAQL YDGRTGDQFE RTTTVGYMHV
LKLHHLVDDK MHARSTGPYS LVTQQPLGGK AQFGGQRFGE MEVWALEAYG ASYTLQEMLT
VKSDDVQGRT KVYESIVKGE HAITAGMPES FNVLVKEIRS LGIDIELERS
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