| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4045 |
|---|
| Symbol | |
|---|
| ID | 4013295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 4246278 |
|---|
| End bp | 4246904 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637943693 |
|---|
| Product | LuxR family transcriptional regulator |
|---|
| Protein accession | YP_550836 |
|---|
| Protein GI | 91789884 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.370155 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCAGCG ACTGGCTGTG TGCCCTGCGC GAGTTTTCGG TGGAAGCCCT GATGGTGCTG
GGCCCGGATC CCTTTGGCGG CCAGGAGGAC CGGCTGGTAC TGGCCTTGCA CCCGCCGCGC
CTGCTGGATG CGGCCGAGGC GCTGGCGGAG AGCCGGGACT TCGGCGCCCC ATGGCGTGAT
TCGGATGCCC CGCTCGTGGC CTGGCAGGAT ATTTCAAGGT CCGCCTTCGA AAACCTGGGC
CGCTGGCGCA GGCTCTGGCT GGGCCACGGC TACCAGAGCG TCGTGCGCAT CGCGTTTCCG
CTGACCGTGG GGCGCGCCTT CGAATGCTAT CTTTTCAGCC CGCGCCAGTG GCATGACCGC
AGCGAGGCGG CGCTGCTGGC CTGGTCGGCA CTCAATATCT GGCCCTTGCT CAAGCGCGTC
CTGGCCGAAG CGCGCAGCCC GCTGAGCCCG CGCGAGCTGG AATGCCTGAG CCTGGCTTTT
CAGGGCAGGA CGGCGCGCGA AAGCGGCGAC ATCCTCGTTT GCAGCGAGCG CACCGTGAAC
TTTCACCTCT CCAATGCCAT GGCCAAGCTC AAGGTCGACA ACAAGCTGGC GGCCATTCAG
CGCGCCTGCT GGTTTGGCCT GATCTGA
|
|---|
| Protein sequence | MISDWLCALR EFSVEALMVL GPDPFGGQED RLVLALHPPR LLDAAEALAE SRDFGAPWRD
SDAPLVAWQD ISRSAFENLG RWRRLWLGHG YQSVVRIAFP LTVGRAFECY LFSPRQWHDR
SEAALLAWSA LNIWPLLKRV LAEARSPLSP RELECLSLAF QGRTARESGD ILVCSERTVN
FHLSNAMAKL KVDNKLAAIQ RACWFGLI
|
|---|
| |