| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_3921 |
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| Symbol | |
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| ID | 4013405 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | - |
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| Start bp | 4115673 |
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| End bp | 4116980 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637943571 |
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| Product | putative sigma factor |
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| Protein accession | YP_550714 |
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| Protein GI | 91789762 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.67535 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.14729 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATTCAG GCACGCACCA GGCGATTGCC GCGGTCTGGC GCATCGAGTC TGCCAAGATC
GTAGCCGCTG TCCTGCGCAT GGTGCGTGAC ATCGGCCTGG CCGAGGAGCT GGCGCAGGAC
GCCCTGGTGG CGGCGCTGGA GCATTGGCCC ACCGAGGGCG TGCCCCATAA CCCGGGCGCC
TGGCTGATGA CCACCGCAAA GAACCGGGCG CTTGACCACC TGCGCCGCCA CAAGCTGCTC
GACAGCAAGC TGGCGCAGAT CGGCCATGAC CTGGAGGCGC AGGAGGCGCT GGTCGTGCCT
GACTTTGTCG ATGGGCTCGA CGCCGCCCGG GCCAACCAGA TCGGCGACGA CCTGCTGCGG
CTGATCTTCA CCGCCTGCCA CCCCGTGCTC TCGACTGAAG CGCGGGTGGC GCTGACGCTG
AGGCTGCTGG GCGGCCTGAC GACCCACGAG ATAGCCCGCG CCTTCCTGGT GGCCGAGCCG
ACGATCGCTC AGCGCATCGT TCGCGCCAAG CGCACGCTGG GGGAGGCGCG CGTGCCTTTC
GAGGTGCCGG TCGGCGACGC ACTGGCCGAA CGGCTGGCCT CGGTGCTCGA GGTGGTTTAC
CTGGTTTTCA ACGAGGGCTA CACCGCCACC GCGGGCGAGG ACTGGATGCG GCCGGCGCTC
ACCGACGAGG CCCTGCGCCT GGGCCGCATG CTGGCGGAGC TGGCGCCCGA CGAATCCGAA
GTGCAGGGCT TGGTCGCGCT GATGGAACTG CAGGCCTCCC GCGCCGCCGC ACGCGTCGAC
GCATCGGGCC GCCCCGTGCT GCTGGCGCAG CAGGACCGTG GCCGCTGGGA CCGCCTGCTG
ATCCGCAGAG GCCTGGCCGC GCTCGCGCAT GCCGAGGCGC TGTGCGGCGC ACGCGGCCAT
CCGCTCGGCA CGTATGCGCT GCAGGCATCG ATTGCGGCCT GCCATGCGCG GGCCCCCACG
GCGGCGGAGA CCGACTGGAC GCGCATTGCC GCGCTGTACG ACGCGTTGGC GCAGACCGCG
CCCTCGCCGG TGGTGGAGCT GAACCGGGCA GTCGCCGTCA GCATGGCGTT CGGGCCCGCG
GCCGGGCTGG AGATCATTGA CACGCTGCGC CAGGAGCCGT CGCTGCAGGC TTATCAGTGG
CTGCCCGGTG TGCGCGGGGA TCTGCTGGCC AAGCTGGGCC GCATGGACGA GGCGCGCGCC
GAATTCGAGC GGGCGGCGCA GCTGGCCGGC AACCTGCGGG AGCGGGAGCT GCTGCTCGAA
CGCGCGCGCG ACCCGGCGAG GCAGGAGCGG GAGCGCCCGC CGGACTAG
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| Protein sequence | MHSGTHQAIA AVWRIESAKI VAAVLRMVRD IGLAEELAQD ALVAALEHWP TEGVPHNPGA
WLMTTAKNRA LDHLRRHKLL DSKLAQIGHD LEAQEALVVP DFVDGLDAAR ANQIGDDLLR
LIFTACHPVL STEARVALTL RLLGGLTTHE IARAFLVAEP TIAQRIVRAK RTLGEARVPF
EVPVGDALAE RLASVLEVVY LVFNEGYTAT AGEDWMRPAL TDEALRLGRM LAELAPDESE
VQGLVALMEL QASRAAARVD ASGRPVLLAQ QDRGRWDRLL IRRGLAALAH AEALCGARGH
PLGTYALQAS IAACHARAPT AAETDWTRIA ALYDALAQTA PSPVVELNRA VAVSMAFGPA
AGLEIIDTLR QEPSLQAYQW LPGVRGDLLA KLGRMDEARA EFERAAQLAG NLRERELLLE
RARDPARQER ERPPD
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