Gene Bpro_3873 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBpro_3873 
Symbol 
ID4013475 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas sp. JS666 
KingdomBacteria 
Replicon accessionNC_007948 
Strand
Start bp4064669 
End bp4065421 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content64% 
IMG OID637943524 
Productextracellular solute-binding protein 
Protein accessionYP_550667 
Protein GI91789715 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.543903 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.744123 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACATTC CATCGCAGAT CATCAAAGCA TTCACGCCAA CAGGCAAGCT GCGGGCCTCC 
ATCAACCTGG GCAACCCCAT CCTCGCCAAC AGCGATGCTG CAACGGGTGA GCCCGTCGGC
GTGTCGATCG ACCTGGCGCG GGCTTTCGCC GAACGGCTTG GCGTCGGGAT CGAATTGGTG
GTGTTCGACA CCGCGGGAAA ATCCGTGGAT GCCGTGACCC AGGAGCAGGC GGATATCGGG
TTCTTTGCGA TTGATCCGCT GCGTGGCGAG GGAATATCCT TCACAGCCCC CTATGTGCTG
ATTGAAGGCA GCTACATGGT GCCCCAGGAC TCACCGATTC AGGCCAATGA CGAGGTCGAT
CGCCCGGGTC ATCGGGTCAC GGTCGGCAAG GGCAGTGCCT ACGACCTGTA CCTGAGCCGG
GAACTTCGCG AGGCGCAGAT CGTGCGGGCA CCGACGTCCC CGACCGTCGT GGATATCTTC
GTGGCGCAGG GCCTGGAGGT GGCGGCAGGC GTCAGGCAGC AACTGGAAGG GGACGCCAGG
CGCTTTCCCG GCCTGCGACT CCTGCCTGGC CGTTTCATGG TGATCCAGCA GGCCATGGGC
ACACCCAAAG GTCGCGGGCA TGAAACGGCG GAGCTCTTGC GCCAATACGT CGAGGACATG
AAAGCCAGCG GTTTTGTGGC CAAGGCACTG GCCCGCCACG GCATCCAGGG TGCTTCGGTC
GCGCCCCCCT CCGCCGCTGC CGCTGCGCAG TGA
 
Protein sequence
MNIPSQIIKA FTPTGKLRAS INLGNPILAN SDAATGEPVG VSIDLARAFA ERLGVGIELV 
VFDTAGKSVD AVTQEQADIG FFAIDPLRGE GISFTAPYVL IEGSYMVPQD SPIQANDEVD
RPGHRVTVGK GSAYDLYLSR ELREAQIVRA PTSPTVVDIF VAQGLEVAAG VRQQLEGDAR
RFPGLRLLPG RFMVIQQAMG TPKGRGHETA ELLRQYVEDM KASGFVAKAL ARHGIQGASV
APPSAAAAAQ