| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_2913 |
|---|
| Symbol | |
|---|
| ID | 4014410 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 3075591 |
|---|
| End bp | 3076700 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637942576 |
|---|
| Product | spermidine/putrescine ABC transporter ATP-binding subunit |
|---|
| Protein accession | YP_549725 |
|---|
| Protein GI | 91788773 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAAA ACGATTTCCT TGTACGCTTT TCAAGCGTGC AAAAAACCTA TGACGGCGAG
CAGCTTGTTG TGCAGCAGCT CGACCTCGAC ATTCATCGCG GGGAATTCCT GAGCCTGCTT
GGGCCGTCCG GCTCCGGAAA AACCACTACG CTGATGATGC TGGCCGGTTT TGAATCCCCG
ACGGCGGGCG AGATTTTCCT GAACGGCTCG CAGATCACGA GCACGCCACC CCACAAGCGC
AATTTCGGCA TGGTGTTCCA GAACTATGCG CTGTTCCCGC ATCTCACGGT GGGGCAGAAC
GTGGCCTATC CGCTCACGGT GCGCAAGGTG TCCCGGGCGG ATCAGGATCG CCGCGTGCAG
CGCGCCCTGG ACATGGTTCG CCTCACAGGG ATGTCAGACC GGCTGCCCGG ACAGCTTTCC
GGCGGCCAGC AGCAGCGCGT CGCACTGGCA CGGGCACTGG TATTTGAGCC CCAGCTGGTG
CTGATGGATG AACCGCTGGG CGCGCTCGAC AAGCAGTTGC GCGAGCACAT GCAGATTGAG
CTGAAAGAGT TGCACCGGCA ACTGGGCGTG ACTTTTGTCT ATGTCACGCA CGACCAGGGC
GAGGCCCTGA CGATGAGCGA CCGGGTGGCC GTCTTCAACG ACGGCGCGAT CCAGCAACTG
GCCCCCGTGG AAGAACTGTA TGAGGCACCC TCAAACCGTT TCGTCGCCGG TTTCGTGGGC
GACAGCACCC GGCTCAAAGG AAAACTTTTC GGCGGGCAGC CCGGCGGCGA GAGCCGGGCC
GGCATTGAAT TGCCGGATGG CCGCGTGCTC CACGGCATCA ACGTCAATCA CCCGACCGCG
GGTGCGCAGG TAGAGGCTTA CATCCGGCCG GAGCGCATTG TGCTGCACCG CCAGACGCCC
GCCTCATCTG CCGATGTGCT GCCTGCACGC GTGGCACGCG TGATTTATTT TGGCGATCAC
CTGCGACTGC TGTGCGAAGT CGGCCCAGGC CAGGCAGAAG CCACGGTCAA GCTACCCCTG
ACCCTCCTGA ACGGCTTGGC GCCACCGCAG CCCGGCGACG CTGTTCATCT CGAATTTCCG
GCTGCGTTTA CGCGGATCTA TGCGGTGTAA
|
|---|
| Protein sequence | MTKNDFLVRF SSVQKTYDGE QLVVQQLDLD IHRGEFLSLL GPSGSGKTTT LMMLAGFESP
TAGEIFLNGS QITSTPPHKR NFGMVFQNYA LFPHLTVGQN VAYPLTVRKV SRADQDRRVQ
RALDMVRLTG MSDRLPGQLS GGQQQRVALA RALVFEPQLV LMDEPLGALD KQLREHMQIE
LKELHRQLGV TFVYVTHDQG EALTMSDRVA VFNDGAIQQL APVEELYEAP SNRFVAGFVG
DSTRLKGKLF GGQPGGESRA GIELPDGRVL HGINVNHPTA GAQVEAYIRP ERIVLHRQTP
ASSADVLPAR VARVIYFGDH LRLLCEVGPG QAEATVKLPL TLLNGLAPPQ PGDAVHLEFP
AAFTRIYAV
|
|---|
| |