| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_2422 |
|---|
| Symbol | |
|---|
| ID | 4014921 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 2521373 |
|---|
| End bp | 2522515 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637942087 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_549239 |
|---|
| Protein GI | 91788287 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4239] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00168824 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTAAATT TGACTGACCC CCCCGAAGCG GCCGTTGGCC GCCTCCCCCC CGAGGGGGCG
CCGCTGGCGG ACGGGCGGAG CCCGATCCGC GGCGGCCTTG GTGAAAACCG TTCTGTGGTC
AGTCTTAGTC CGGGTCGGCG GGCGTGGAAG CGTTTTCGCC GCAACAAGCT TGGGTTTTAC
AGCCTGATCC TGTTTTCGAC TCTGGTGGTG CTCAGCCTCT TCGCCGAGGT GCTGTCCAAC
GACACGCCGC TGGTGGCCCA CTACAAGGGC GAGTATTACT TTCCGCTGCT CAAGGACTAT
TCGGAAAAGA CCTTTGACGG CGACTTTGAA ACGCCCACCG ACTACCTGGA CCCTTTCATC
CGCGAGAAGC TGGGGCAGGG GGGCAACTGG GCGCTGTACC CGCCCAACCC TTACGGCCCG
CGCACGATCA ACTATTTTGC AAAAGAACCC AACCCTTCGG CGCCTTCACG CGACAACCTG
CTGGGCACGG ACGACCGGGG GCGCGACCTG CTGGCGCAGC TGATCTATGG CTTTCGATTA
AGCGTGCTGT TCGGTCTGGC ACTGACAGTG ATTGGCGTGG TGATCGGCGT GATCACCGGG
GCCGTTCAGG GGTATGCCGG CGGCAAAACA GACCTCGCCT TCCAGCGGTT CATGGAAATC
TGGGGCTCCA TGCCCGAGCT TTATTTGCTG ATCATCTTCA GCGCGGTGTT TGCGCCCAGC
GTGGCACTGC TGCTGTTTCT CCTCAGCCTG TTTGGCTGGA TGGGATTGTC CGACTATGTG
CGCGCCGAGT TTTTGCGCAA CCGCCAGATG GACTATGTGC GCGCAGCCAG GGCCCTGGGC
GTGAGCAATC TGCAGATCAT GTGGCGGCAC ATCCTGCCCA ACAGCATGAC GCCTGTGGTG
ACGTTTTTGC CCTTTCGCAT GAGCGCGGCG ATCTTGGCGC TGACCTCGCT GGATTTCCTG
GGCCTGGGCG TGCCCCCGGG TACGCCCTCG TTGGGCGAGT TGCTCAACCA GGGCAAGGCG
AACATCGATG CCTGGTGGAT TTCGATGTCG ACATTTGCCG TGCTGGTCGT CACGCTGTTG
CTGCTGACCT TCATGGGCGA CGCCTTGCGC GATGCCCTGG ATCCCCGAAA GGCTGAGCTA
TGA
|
|---|
| Protein sequence | MLNLTDPPEA AVGRLPPEGA PLADGRSPIR GGLGENRSVV SLSPGRRAWK RFRRNKLGFY
SLILFSTLVV LSLFAEVLSN DTPLVAHYKG EYYFPLLKDY SEKTFDGDFE TPTDYLDPFI
REKLGQGGNW ALYPPNPYGP RTINYFAKEP NPSAPSRDNL LGTDDRGRDL LAQLIYGFRL
SVLFGLALTV IGVVIGVITG AVQGYAGGKT DLAFQRFMEI WGSMPELYLL IIFSAVFAPS
VALLLFLLSL FGWMGLSDYV RAEFLRNRQM DYVRAARALG VSNLQIMWRH ILPNSMTPVV
TFLPFRMSAA ILALTSLDFL GLGVPPGTPS LGELLNQGKA NIDAWWISMS TFAVLVVTLL
LLTFMGDALR DALDPRKAEL
|
|---|
| |