| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_0555 |
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| Symbol | |
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| ID | 4011287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | + |
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| Start bp | 553771 |
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| End bp | 555051 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637940237 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_547413 |
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| Protein GI | 91786461 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.307966 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCTCG CCGTCGTCAT TGCCTTCATG CTGCTGGCCC TGCTCGGGCT GCCGATCGCC
TTTGCGATGG GCGTGGCCGC GCTCGGCGCC CTCTGGTACA GCGGGGTGGA TTTTTCGATG
GTGCCGCAGC GCATGATGCA CGCCGTCAAC TCCTTTCCGC TGATGTCCAT CCCCTTCTTT
ATGCTGGCCG GCGAGCTGAT GATCAAGGCC GGCATCGTTG AGCGGCTCAT CGCGCTGGCC
AACACCATGG TCGGCCGGGT GCGCGGCGGC ATGGCGCATG TCACCATGCT GTCGGGCGCG
GGCCTGGCTA CCGTGTCCGG TGCTGCCGTG TCGGATGCGA GCGCGCTGTC GTCGATGCTG
GTCCCCTCGC TGACGAAAAT CTACGACAAG GGTTTCGCCA CCGCCATCGT CGCGGCGGCA
GCCAACCTCG GGCCCATCAT CCCGCCTTCC GGCGCGATGA TCGTCTACGC CTTCATGGCC
GGCTCGTCTG TGTCGGTGGG CGGCATGTTC ATGGCCGGCG TAGTGCCGGG CCTGCTGATC
ACCTTCGGTT TCATCGCGCT GTGCTCGTGG ATCGCCACGC GCCGCGGCTG GGCCGCCACC
GGTGAGCCCT TCCGGCTGGC CACCGTGCTG GCCGAGCTGC GCCGGTCGCT GATTGTGCTG
GCCATGCCGG TCCTGGTGAT CGGTGGCATC GTCGGCGGCG CCTTCACCGC CACCGAGGGC
TCGGCGATCG CGGTGGTTTA CTCCACGGCG CTGGGCTTCT TTGTCACCCG CACGCTCAAG
CTGGCCGACC TGCCCGGCAT CGTGGTGCGT GCAGCCATCA CCTCGGCCAT GGTGGGCGCG
CTGATCGCCT TTGCCTCCAT CATCACCTAC CTGATGACGG TAGACCTGCT GCCGCAGCAA
CTCTCCGAAT TGCTGCGCAG CCTCACCACC AGCCCGCTCG TCTTTCTGGT CCTGGTCTCG
GTGTTGTTGT TCGTCGTTGG CATGTTCCTG GAGTCGAACG CGGCCTACAT CATGCTGGTG
CCGCTGCTGC ATCCGATTGC GCTGCAATAC GGCATTGATC CCTTGCACTT CGGATTCCTG
TTCGTGCTCA ACCTCGTGAT CGGCATGCTC ACGCCGCCCG TCGGGGTGGT GCTGTTCGCC
GTCTGCGGCA TCACCGGCGT GCGCATGCGC GAGCTGGTCA GCAACCTCTG GCCCTTCATC
GTGCTGATGT ACGGCGTGCT CGTGCTGTGC ATGCTGGTGC CTTCCTTCGT CACTGCGCTG
CCGCACGCGC TCGGCTACTG A
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| Protein sequence | MSLAVVIAFM LLALLGLPIA FAMGVAALGA LWYSGVDFSM VPQRMMHAVN SFPLMSIPFF
MLAGELMIKA GIVERLIALA NTMVGRVRGG MAHVTMLSGA GLATVSGAAV SDASALSSML
VPSLTKIYDK GFATAIVAAA ANLGPIIPPS GAMIVYAFMA GSSVSVGGMF MAGVVPGLLI
TFGFIALCSW IATRRGWAAT GEPFRLATVL AELRRSLIVL AMPVLVIGGI VGGAFTATEG
SAIAVVYSTA LGFFVTRTLK LADLPGIVVR AAITSAMVGA LIAFASIITY LMTVDLLPQQ
LSELLRSLTT SPLVFLVLVS VLLFVVGMFL ESNAAYIMLV PLLHPIALQY GIDPLHFGFL
FVLNLVIGML TPPVGVVLFA VCGITGVRMR ELVSNLWPFI VLMYGVLVLC MLVPSFVTAL
PHALGY
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