| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_0127 |
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| Symbol | |
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| ID | 4012327 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | - |
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| Start bp | 129205 |
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| End bp | 131019 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637939811 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_546990 |
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| Protein GI | 91786038 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.857442 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCAACA CTTCGCGCAT CTCCCTGGCC GACGTGGCCC GGGCCACGGG CACGACCCTT
GGCAACTTCG ACAGCGCATT GGTGGCAAAA GCCCTGGGCG GATTTGCCAA TGCCCACATT
GGCGGCGATG CCCACCCCAA CATTGCCGAC ATCAGCGAAT GCCTGTTTTT TTCTCCGGGG
GACGGACGCA TCTGGCTGCA AGACCAGCGC ATGGTCTTGT TGCACACGGA AGCCCTGGGC
TCCCTGCGGC GCGAAATGAT TGACAGCCTG GGGCTGGAGC AGGCCCGCGG ACTGTTCACC
CGTGCGGGCT ATGTCAGCGG CGCCCGCGAT GCCCAACTGG TGCGGCGGCA GTGGCCCGAT
GCAGACCCGT CGGCCATCGC CCTCGCGGGT ACGCGCCTGC ATGCGCTGGA GGGGGTGGTG
AAAGTCGAGG TGGTGCGGGC CTCGTACAAG CCGGAAACGG GCAGCTATGA AGGCGAATTT
CTGTGGCACA ACTCCAGCGA AGACGATGAA CACATCGCCG CCTACGGGAT TGGCGGCTCA
CCCGCCTGCT GGATGCAGGT GGGCTATGCC ACGGGCTATG TCAGCACATT GTTCGGCCAT
CTCGTCGTCT TCCGGGAAAC GCAGTGTCGC TCCATGGGCG AAGCGCATTG CCAGGTGGTA
GGCAAATCGG CCGACCAGTG GGACGATATC GCGCAAGACA TGCGCTACCT CAACGTCAGG
GAGTTTGTCG ATACCGCAGC CTACGCCCGC CCAGCCCCCA GCGCCGCCGA ACTGCCCCAG
GTCGAGGCCT CCGCCGGCGA TGCGATGGTC GGCGCCTCCT CGGCCTTCAA CGCCGCCTGC
CACCAGCTGA GCCGCGTGGC GCGTACCTCG GCCACCGTGC TGTTTACCGG CGAGTCCGGC
GTGGGCAAGG AAAAATTTGC CCGCATGCTG CACAAGATCA GCCCGCGCAA GGACCGGCCG
TTTGTGGCGG TGAACTGCGC AGCCATCCCG GAAACCCTGA TCGAGTCCGA ACTGTTCGGC
GTGGAACGCG GGGCGTACAC CGGAGCCAGC CACTCGCGGC CAGGCCGCTT TGAGAGAGCC
AGCGGCGGCA CCCTGTTTCT GGACGAGATT GGCTCGCTGA GCTACGTCGC CCAAGGCAAG
CTGCTGCGCG CCTTGCAGGA GGGCGAGGTC GAACGGGTGG GCGGCACGCG CAGCATTGCA
GTGGATGTGC GCGTCGTGGC GGCTACCAAT GAAGCGCTGC GTCAAGCCGT GCTGGAGGGA
AAGTTTCGCG AGGATTTGTT CTTTCGGCTC AATGTCTTCC CCATTCACCT GCCGCCCCTG
CGCGAGCGGC GTGATGACAT TCCCCTGTTG ATGAACCACT TTCTGAACCA TTACCGGCGC
AAGCACGGCT GCAACACTGG CGGCTTCACG CAGGCAGCGG TTCGGTCCCT GCTGAACTAT
GCCTTTCCAG GCAACATCCG CGAACTGCAA AACCTGATCG AACGCGCTGT GATCATGGCC
GACATGGAAG GGCTGATTGA TGTGCACCAC TTATTCACCA GCGGTGAAAC CCTGAGCGCC
GACATCATGA CGCTGCGGCT GAAGGGAAGC TCCGCAACTT TGAACTTCGC AGAGCCTGCA
GGCTGCGCAC AAGCCTTGGC GATAGCCACA CCGTCAAGCA CGGCGCAGGC TCCGCAGTCT
CTGGATCAGA CCGAGCGCGA CACGCTCCTG CGGGCGATTT CCACATCCCA GGGGAATCTG
TCCGCCGCAG CGCGGCTGCT CAACACAACG CGGGCGAAGC TGGCCTACCG CGCAAGAAAG
CATCGCCTCC TTTGA
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| Protein sequence | MGNTSRISLA DVARATGTTL GNFDSALVAK ALGGFANAHI GGDAHPNIAD ISECLFFSPG
DGRIWLQDQR MVLLHTEALG SLRREMIDSL GLEQARGLFT RAGYVSGARD AQLVRRQWPD
ADPSAIALAG TRLHALEGVV KVEVVRASYK PETGSYEGEF LWHNSSEDDE HIAAYGIGGS
PACWMQVGYA TGYVSTLFGH LVVFRETQCR SMGEAHCQVV GKSADQWDDI AQDMRYLNVR
EFVDTAAYAR PAPSAAELPQ VEASAGDAMV GASSAFNAAC HQLSRVARTS ATVLFTGESG
VGKEKFARML HKISPRKDRP FVAVNCAAIP ETLIESELFG VERGAYTGAS HSRPGRFERA
SGGTLFLDEI GSLSYVAQGK LLRALQEGEV ERVGGTRSIA VDVRVVAATN EALRQAVLEG
KFREDLFFRL NVFPIHLPPL RERRDDIPLL MNHFLNHYRR KHGCNTGGFT QAAVRSLLNY
AFPGNIRELQ NLIERAVIMA DMEGLIDVHH LFTSGETLSA DIMTLRLKGS SATLNFAEPA
GCAQALAIAT PSSTAQAPQS LDQTERDTLL RAISTSQGNL SAAARLLNTT RAKLAYRARK
HRLL
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