Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_7341 |
Symbol | |
ID | 6280627 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010679 |
Strand | + |
Start bp | 65197 |
End bp | 66885 |
Gene Length | 1689 bp |
Protein Length | 562 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642619520 |
Product | type IV secretion system protein VirD4 |
Protein accession | YP_001893555 |
Protein GI | 187921966 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0552655 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0313402 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGATGC GTCGTTACGA TGACAGATAC AAGCCGGCGG CCTTCTTCAG CGTCGTGCTG GCGACGTTCC TGGTCTGGTT CTGGTCTGTC CACCGACTAT TCGTGTTGCC TCCGGCGATC TTTCTCGCCG CGTGGCGCGC GGCAAAAGTC ACCCCCGACG TTCCGGCCAT ATGGGTGCCA ACCGCTGTTG CGTTCTCGTA TGGTCTGCTC GTAATGGGTG TTATTTTTGG CTACTTCAAA AGTGGTTTCG AAGGCGCTGA TTATGTGATG TATCTGCGCG GCGCGAGAAT GGTCGGGCAT GCGCGCCTCA AAGATATGAC GAGGAAATTC TTCTATAAGC ATCTTCGTAT TGCCGGCGTT CCTATTCCTG AGTGGCTTGA GGCATTACAT TTTCGCGTTA TCGGGTCGAC CGGTGCCGGT AAATCGGTTG TGATATCAGA TTATATCGAG TCGGCGCTCG CGCGACGCGA AAGAATGATC TGTATTGACC CTAATGGTCA GTTCATGGAG AAATTTTATC GCGAAGGCGA TATTATTATT AATCCGTTTG AGGCGCGGAC AAAATTTTGG GGAATATTCA ATGAAATCAG AACGCCCTAC GATGTAGCCT CTTATTCGAT AAGTTTGATA CCGAAAAGCC CAAGCACCGA GCAGGAAATT TGGAATGCAA TGGCCCGGAC GATTAGCAGT GAAGTAATGC TGAAACTCTG GCGGCTTGGC ATTGGCGATA CGGACCATCT GGTTTACTGG CTGACAATCG CGTCTAACGA GCAATTAATG GAAATGCTCG CCGACACTGC TGCGCGCGGT ATGTTTCACG GCGCGGAGGA AACGATTGGT AGCGTTCGCG CGGTTCTGAC ACGCTATATC ACTCCGCATA AATACCTTTC GGACATCGAG ACCGTCGAAG GCTATTTCAG CCTGCGCGAA TGGATCGACT CGAACGCCGA GGATCAGCCC AACGTCTGGA TTATCTGGCG AGAGGACCAG CTTGCATCCC TGAAGCCGCT GATCTCATGC ATGTTCGACG TTGCATGCAA TGCCGCCCTC TCCAAGCCAA TTACGGATGA AACCGTCGCG ACCCATCTGG TTGTTGACGA GGTGGACTCG CTCGAAAAGC TCAACTACCT TGTGCCGGCC GCCACGAAGG GCCGAAAACA CCGCCTGCAT ATTTGCGCGG GGATGCAGTC TGACGCCCAG CTCGACGGCA CCAACGGCAA AGACGACGCC ATGACCGTTC GAAACAGCCT GCGCACGACC GTCGCCCTTG GTATAGCCGA GGGTGATACC TATACCGCCG AACAACTGTC AAAGGGACTC GGTGAACATG AGGTAATTCG GCAGCGCACC ACGGCTTCGG ACACTGGCCG CGACTCGCAT GGGCAGGAAG TAATCAAGGA ACGCGTGGTC ATTCCCTCGC AGATCACTGG ATTGCCGAAC CTCACCGGCT ATCTGAAGCT CGCGGGAGAC TGGCCCATCT GCAAGTTCAC GATGCCCTAC AAGAAACGCA AGGCCGTTAC CGAGGCGTTC ATCATGGCGC AGAACCGCTG GACGATGGAT GCTGAAGCAG CCAACGAACA GGCGCGGATG GACTTCTCGC GCGCGAAGCG TGCCGCAACT GACGTAGACG CTAGGGACGT TGATGACGAC GACTCCCCTA GCCCCGCCCT CGAATCCTCC CGGCCATAA
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Protein sequence | MVMRRYDDRY KPAAFFSVVL ATFLVWFWSV HRLFVLPPAI FLAAWRAAKV TPDVPAIWVP TAVAFSYGLL VMGVIFGYFK SGFEGADYVM YLRGARMVGH ARLKDMTRKF FYKHLRIAGV PIPEWLEALH FRVIGSTGAG KSVVISDYIE SALARRERMI CIDPNGQFME KFYREGDIII NPFEARTKFW GIFNEIRTPY DVASYSISLI PKSPSTEQEI WNAMARTISS EVMLKLWRLG IGDTDHLVYW LTIASNEQLM EMLADTAARG MFHGAEETIG SVRAVLTRYI TPHKYLSDIE TVEGYFSLRE WIDSNAEDQP NVWIIWREDQ LASLKPLISC MFDVACNAAL SKPITDETVA THLVVDEVDS LEKLNYLVPA ATKGRKHRLH ICAGMQSDAQ LDGTNGKDDA MTVRNSLRTT VALGIAEGDT YTAEQLSKGL GEHEVIRQRT TASDTGRDSH GQEVIKERVV IPSQITGLPN LTGYLKLAGD WPICKFTMPY KKRKAVTEAF IMAQNRWTMD AEAANEQARM DFSRAKRAAT DVDARDVDDD DSPSPALESS RP
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