| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7341 |
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| Symbol | |
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| ID | 6280627 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010679 |
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| Strand | + |
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| Start bp | 65197 |
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| End bp | 66885 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 642619520 |
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| Product | type IV secretion system protein VirD4 |
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| Protein accession | YP_001893555 |
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| Protein GI | 187921966 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0552655 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0313402 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGATGC GTCGTTACGA TGACAGATAC AAGCCGGCGG CCTTCTTCAG CGTCGTGCTG
GCGACGTTCC TGGTCTGGTT CTGGTCTGTC CACCGACTAT TCGTGTTGCC TCCGGCGATC
TTTCTCGCCG CGTGGCGCGC GGCAAAAGTC ACCCCCGACG TTCCGGCCAT ATGGGTGCCA
ACCGCTGTTG CGTTCTCGTA TGGTCTGCTC GTAATGGGTG TTATTTTTGG CTACTTCAAA
AGTGGTTTCG AAGGCGCTGA TTATGTGATG TATCTGCGCG GCGCGAGAAT GGTCGGGCAT
GCGCGCCTCA AAGATATGAC GAGGAAATTC TTCTATAAGC ATCTTCGTAT TGCCGGCGTT
CCTATTCCTG AGTGGCTTGA GGCATTACAT TTTCGCGTTA TCGGGTCGAC CGGTGCCGGT
AAATCGGTTG TGATATCAGA TTATATCGAG TCGGCGCTCG CGCGACGCGA AAGAATGATC
TGTATTGACC CTAATGGTCA GTTCATGGAG AAATTTTATC GCGAAGGCGA TATTATTATT
AATCCGTTTG AGGCGCGGAC AAAATTTTGG GGAATATTCA ATGAAATCAG AACGCCCTAC
GATGTAGCCT CTTATTCGAT AAGTTTGATA CCGAAAAGCC CAAGCACCGA GCAGGAAATT
TGGAATGCAA TGGCCCGGAC GATTAGCAGT GAAGTAATGC TGAAACTCTG GCGGCTTGGC
ATTGGCGATA CGGACCATCT GGTTTACTGG CTGACAATCG CGTCTAACGA GCAATTAATG
GAAATGCTCG CCGACACTGC TGCGCGCGGT ATGTTTCACG GCGCGGAGGA AACGATTGGT
AGCGTTCGCG CGGTTCTGAC ACGCTATATC ACTCCGCATA AATACCTTTC GGACATCGAG
ACCGTCGAAG GCTATTTCAG CCTGCGCGAA TGGATCGACT CGAACGCCGA GGATCAGCCC
AACGTCTGGA TTATCTGGCG AGAGGACCAG CTTGCATCCC TGAAGCCGCT GATCTCATGC
ATGTTCGACG TTGCATGCAA TGCCGCCCTC TCCAAGCCAA TTACGGATGA AACCGTCGCG
ACCCATCTGG TTGTTGACGA GGTGGACTCG CTCGAAAAGC TCAACTACCT TGTGCCGGCC
GCCACGAAGG GCCGAAAACA CCGCCTGCAT ATTTGCGCGG GGATGCAGTC TGACGCCCAG
CTCGACGGCA CCAACGGCAA AGACGACGCC ATGACCGTTC GAAACAGCCT GCGCACGACC
GTCGCCCTTG GTATAGCCGA GGGTGATACC TATACCGCCG AACAACTGTC AAAGGGACTC
GGTGAACATG AGGTAATTCG GCAGCGCACC ACGGCTTCGG ACACTGGCCG CGACTCGCAT
GGGCAGGAAG TAATCAAGGA ACGCGTGGTC ATTCCCTCGC AGATCACTGG ATTGCCGAAC
CTCACCGGCT ATCTGAAGCT CGCGGGAGAC TGGCCCATCT GCAAGTTCAC GATGCCCTAC
AAGAAACGCA AGGCCGTTAC CGAGGCGTTC ATCATGGCGC AGAACCGCTG GACGATGGAT
GCTGAAGCAG CCAACGAACA GGCGCGGATG GACTTCTCGC GCGCGAAGCG TGCCGCAACT
GACGTAGACG CTAGGGACGT TGATGACGAC GACTCCCCTA GCCCCGCCCT CGAATCCTCC
CGGCCATAA
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| Protein sequence | MVMRRYDDRY KPAAFFSVVL ATFLVWFWSV HRLFVLPPAI FLAAWRAAKV TPDVPAIWVP
TAVAFSYGLL VMGVIFGYFK SGFEGADYVM YLRGARMVGH ARLKDMTRKF FYKHLRIAGV
PIPEWLEALH FRVIGSTGAG KSVVISDYIE SALARRERMI CIDPNGQFME KFYREGDIII
NPFEARTKFW GIFNEIRTPY DVASYSISLI PKSPSTEQEI WNAMARTISS EVMLKLWRLG
IGDTDHLVYW LTIASNEQLM EMLADTAARG MFHGAEETIG SVRAVLTRYI TPHKYLSDIE
TVEGYFSLRE WIDSNAEDQP NVWIIWREDQ LASLKPLISC MFDVACNAAL SKPITDETVA
THLVVDEVDS LEKLNYLVPA ATKGRKHRLH ICAGMQSDAQ LDGTNGKDDA MTVRNSLRTT
VALGIAEGDT YTAEQLSKGL GEHEVIRQRT TASDTGRDSH GQEVIKERVV IPSQITGLPN
LTGYLKLAGD WPICKFTMPY KKRKAVTEAF IMAQNRWTMD AEAANEQARM DFSRAKRAAT
DVDARDVDDD DSPSPALESS RP
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