Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_7246 |
Symbol | |
ID | 6280716 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010679 |
Strand | + |
Start bp | 4608 |
End bp | 6626 |
Gene Length | 2019 bp |
Protein Length | 672 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642619426 |
Product | type II secretion system protein E |
Protein accession | YP_001893461 |
Protein GI | 187921872 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCAAC TGATCCAACG TTTGAAGCAC CGCTTCGGCC AGCTTGGCCG CAAGGTTCCC GGTGCGCAAC AGCCGGCACA GGTAGCGCCG ATCACACTGC CGCAAAAGCA GTTTGATCGC GTCGTCGTGC GTTCATCTGA CGTGCGTGAG GGCGAAATCT TCAATGGTGT TGTTGTTGCT CAAAGCGAAG TCATCGCCGT TAGCGACCTG CCCAAGTTCA CGCGGACTCT TCAGAAAGAA TTCGTGCTGC CAGAACACCT TGACCACATC TGTCCAATCC AGATAGCCGG CGAAGCCACG GACGGCAAGC GAACGTTCGC TGTCGTGGTC GTTGAGCACA TGTTGAAGTC GGACATGATG GAGGCGGTCA TCCAGGCACT CTCGCGCGAG TACCGGGCGG CGTCCCCTTG CGTGTATGTT GCGACGCAGA ACGTCCTTTC GGAGCTGGCC CTTCGCTCGC GCGACCCGCA AGGCGTCAAG ACGAACGAAA CCGAGCGCGA GAGCACGCTC TGGAATCACT TCGTCAACTT CGTTATGTTC GCCGTCGAAA ACGAAGTGTC CGACTTCCAT ATCCGCCTTC GAACTAGCCA GGAATATTCG CAAGTCAGCT TCCGTATGGA CGGTAGCGTT GCGAGGCCAC GACGTTTTCG TGTATTGACA TCGCAGCTCT CGAACATCAT GGGCTATCTG TACAGCTTCC ACGGTAATTC GAATACGGCC AACTACTTTA GTCTGTCCTT GCCGCTTGAG TGTCAGCTTG AAGAGACTAT AGCCGGGATG CGTATGTCCT TTCGCTGGGG GCAGTTGCCG GTCAGTGACG GACTGAAAAT CGTGCTGCGG ATGCAGCGGC TCGATGCGGA AGCAGCGTTC ACGTCGCTCG GTCGCGAGAA AGGCGGTGCA GGTTTCACCG CACACCAGGT TCCCATTTGG GAGCGGAACC TGTACTCCGC AGGCGGCGCT ATTGTCATGT CCGGCGTGGT CAACTCAGGT AAGAGTAAGA CCGTCTACAC GCTGGTTAGC ATGCTGCCCG ACGACGTGGA AATCAATACG GCTGAAGACC CTGTTGAAAA TCCACTTCGT CACCCCGGCG CTAATCAGCA CTCTACGGCG AGTCGTCTTG GCGAAGATTC CAACAAGGAT ACGTTCACTG CGTTCAAGCT CATGAACAAG CGGATGGACC CGGACGTGAC GTGGATCGGC GAATTGCGTG ACCGCAATAC GGCGAGCGCC TTCCGCGATT CTGTGCTGTC CGGTCAGCGT GTCCTCACGA CAATCCACGC TCCCAACGCC CTCATGATTC CCGAACGCCT GGTATCCGAG GAATTCGGGC TCACGCGTGA GCTTATATCG CTGCCGGAAT TCCTGAAGCT GCTCGTCTAT CAGGCGCTCG TGCCGAAGAA CTGTGCGAAG TGCTCGCTCG ATCCTACTGC ACCAGAGACG GTGAAACTGC TGGACGACAT CCTCTCTGCC GGAGCTGTGC ATGACCCCGT AGTGACGCGG CTCGCTCGCA AGGCGAGGCG CATCGCCGAC CCTGCAATGC TCCATCGCGT CGAACGCCTG TTCCACTTCG ACGTGAAGAG CATGCGTGTG CGCAATCCTC TCGGTTGCCC CCATTGCGCT CGCGAAGGCG TGCCGGACCT CAACGGCCTG CGTGGTCGCC AACTCGTCGC GCAAATGGTT GAGCCGAACT ACGACATGCT CGACACCATT CGCGCCGCAG ACAACATCGG CCTTTACCGG CTCTATCGGA GCATGCGAAT CGCTGGCTTC GATAGCGATA ACTCGGACGG AAAGACCCCG ATGGAAATCG CTATGTTCAA CGTCACACAG GGCGAACTCT GCTTCTCAGA AGTCGAACGC CGCTTCCAGA CAATCGACGC TTACGAACAC CAGCTCAAGC AGATGGTGTC GCAGGCCGAA CGATTCTCCG CTCCGCGCCA CGTCAACGGT AGCAGTAACG GAGCAGCGGA AATACGCATG CCTTCTGCCG TTGAAGAAAC GGCCGCAGCC ATCCAGTGA
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Protein sequence | MKQLIQRLKH RFGQLGRKVP GAQQPAQVAP ITLPQKQFDR VVVRSSDVRE GEIFNGVVVA QSEVIAVSDL PKFTRTLQKE FVLPEHLDHI CPIQIAGEAT DGKRTFAVVV VEHMLKSDMM EAVIQALSRE YRAASPCVYV ATQNVLSELA LRSRDPQGVK TNETERESTL WNHFVNFVMF AVENEVSDFH IRLRTSQEYS QVSFRMDGSV ARPRRFRVLT SQLSNIMGYL YSFHGNSNTA NYFSLSLPLE CQLEETIAGM RMSFRWGQLP VSDGLKIVLR MQRLDAEAAF TSLGREKGGA GFTAHQVPIW ERNLYSAGGA IVMSGVVNSG KSKTVYTLVS MLPDDVEINT AEDPVENPLR HPGANQHSTA SRLGEDSNKD TFTAFKLMNK RMDPDVTWIG ELRDRNTASA FRDSVLSGQR VLTTIHAPNA LMIPERLVSE EFGLTRELIS LPEFLKLLVY QALVPKNCAK CSLDPTAPET VKLLDDILSA GAVHDPVVTR LARKARRIAD PAMLHRVERL FHFDVKSMRV RNPLGCPHCA REGVPDLNGL RGRQLVAQMV EPNYDMLDTI RAADNIGLYR LYRSMRIAGF DSDNSDGKTP MEIAMFNVTQ GELCFSEVER RFQTIDAYEH QLKQMVSQAE RFSAPRHVNG SSNGAAEIRM PSAVEETAAA IQ
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