| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7195 |
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| Symbol | |
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| ID | 6279733 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 3582304 |
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| End bp | 3584238 |
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| Gene Length | 1935 bp |
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| Protein Length | 644 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642618215 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001890851 |
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| Protein GI | 187921819 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTTCA GCGAACCAAG GTCTCCATTT TTCAAGTGGG TCGTCTCTTC CTCTCAGGAT
TTGAGCGCGG ATAATCGCCA GATATTGCTT GCCAATCTGT TCACGCGAAC CGCATCGATC
GTGTTCGCGT CGATCTGTGA AATCAGCGTC TGCGCCACCG CTTACTACCT TTATCCCAAG
GCTCTTTACG CGAGCTGGGG CAGTGCCGTT GTTGCATTGC TGATTGCCCG GCTCGTATTG
ATCTGGTTGT GCTGCTCGCG CAGCGCCAAG GGTCAGCCGA CTCCTACCTC CGCGTTTCTG
TTTGCGAGCC TCCTCTGGAG CGTACTGTTC GGCTACGGCA CCTTGCTGTG CAATATCAGT
GGAGACCAGA CACTGTTCCT GCTTGGCAAC GTTTGCGCCG TGGGCGTTAT CGGCGGATTG
GCCGGACGTA ATGCGGGTAC CCCTCGGCTC GTATTGCTGC AGATCACGTT CATTCTCGGG
TTGCTGGCTG CCGGGGCGGC GCTGTCGCCC GGCTCCGGCA AACTGGTGCT GCTTTTCCAG
GCGCCGTTCT GCGCCGCCGG GTTCTTTACG GTTGCGCTGC GCAGCAATCG CGACACGGTC
GCGTTGCTTC TGGCGCGGGA AAACAGCCAC CGGCTCGCCC ATCACGACAG CCTCACCGGT
TTGCCCAATC GCGCGCGTAT CAGTGAACTG CTGCTCGAAC GCACGGAGAT GGGCGCGCTG
CGTAAAGACC AATCGTTCGC TGTTCTACTG ATCGATCTGG ATGGATTCAA GGCCATCAAT
GACAGCCTGG GCCATGCCGC CGGCGATCAG ATCCTTCAGG AGGCGGCAAT TCGCTTGCGT
GAAGTGTTGC CGAGCGGCGA TCTCGTAGGA CGCCTGGCCG GCGATGAGTT CGTGGCGCTT
TCCGATGGCA CGGGGCAGGC TCGCGACGTC CGCATTCTGG CGGACCGCAT CGTAAAGACT
TTGGCGCGCC CGTTCGCGCT GCGCGAGGCG CTGGTGCATA TCGGCGCGAG CGTGGGTGTC
TCGCTTTATC CAGAGCACGC GAAAACCGGC CCGCAACTGC TGATTTGCGC CGACCGCGCG
TTGTATGCCG TGAAGCGCAG CGGCAAAAGC GCATTCGCTA TTTTCGACGC GGCGAAGCAC
GCGTCGGATG AAAGCCTGAG TCTTCTGCGC AGCGATCTGG AAGGCGCGCT GCATTCGTTC
AGCGGTTTGC GCATGGAGTA CCAGCCCATC GTCGATCTCA GCAGCGGTGC GGTGACCGGT
CGCGAGGCGC TGATGCGCTG GACCCACCCC ACGCGCGGCG AACTGTCGCC GTCCGCGTTC
ATTCCCACCG CTGAACGTAC GGGCCTCATT CTGTCCTTGG GCGAGTGGGC TTTGCTGCAA
TCGTGCAAGG AAGCGGTGAC GTGGCGAGAC AAAGTCACCG TCGCCGTGAA TGTATCGCCG
GTGCAATTGC GGGAGGAGTC GTTTGCTTCG ACCGTTTCGG CGATTCTCCG CAAGACGAAG
CTTCCGCCGC AACGCCTGAA TATCGAGGTC ACGGAGACGG TGCTGCTGGA CGACGATGTC
GTGACCCGGC GCAATGTCGG CAGGCTGCGT GCGTTAGGCA TCGGTCTCGC GCTCGACGAT
TTCGGCACAG GCTTTTCGAC CATGTCGACG CTCGTGCGCT TTTCGTTCGA CAAGCTCAAG
ATCGATAGCT CGTTCGTCAA GGAGTCCGTG CATCGTCGAG AATCGGCGGC GGTAGTGCGC
GGGATCGTCG CGTTGGCGCG GGAAATCGGC ATACCGACTA CGGCTGAAGG CATCGAGACG
CAAGAGCAGC TGGACTTCGT GCGCGTATGC GGATGTACGC ATGCTCAAGG CTTTCTGCTC
GGCAAGCCGG TGCAAAGCCA CGAGATTGCG CGGATCGAAG AAAAGGTTGC CGCGCATTCC
GCGGATAAAG AATGA
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| Protein sequence | MAFSEPRSPF FKWVVSSSQD LSADNRQILL ANLFTRTASI VFASICEISV CATAYYLYPK
ALYASWGSAV VALLIARLVL IWLCCSRSAK GQPTPTSAFL FASLLWSVLF GYGTLLCNIS
GDQTLFLLGN VCAVGVIGGL AGRNAGTPRL VLLQITFILG LLAAGAALSP GSGKLVLLFQ
APFCAAGFFT VALRSNRDTV ALLLARENSH RLAHHDSLTG LPNRARISEL LLERTEMGAL
RKDQSFAVLL IDLDGFKAIN DSLGHAAGDQ ILQEAAIRLR EVLPSGDLVG RLAGDEFVAL
SDGTGQARDV RILADRIVKT LARPFALREA LVHIGASVGV SLYPEHAKTG PQLLICADRA
LYAVKRSGKS AFAIFDAAKH ASDESLSLLR SDLEGALHSF SGLRMEYQPI VDLSSGAVTG
REALMRWTHP TRGELSPSAF IPTAERTGLI LSLGEWALLQ SCKEAVTWRD KVTVAVNVSP
VQLREESFAS TVSAILRKTK LPPQRLNIEV TETVLLDDDV VTRRNVGRLR ALGIGLALDD
FGTGFSTMST LVRFSFDKLK IDSSFVKESV HRRESAAVVR GIVALAREIG IPTTAEGIET
QEQLDFVRVC GCTHAQGFLL GKPVQSHEIA RIEEKVAAHS ADKE
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