| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7036 |
|---|
| Symbol | ispH |
|---|
| ID | 6278040 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 3418361 |
|---|
| End bp | 3419305 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642618059 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_001890695 |
|---|
| Protein GI | 187921663 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0000102733 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGTCA TCCTTGCTCA ACCCCGCGGC TTTTGTGCGG GTGTTGTTCG CGCAATCGAG
ATCGTCGATC GCGCGTTACA GCAACACGGC GCACCTGTGT ATGTCCGCCA CGAGATTGTT
CACAATCGGC ACGTGGTCGA CAATCTGCGC CAGAAAGGCG CGCGCTTCGT CGAGGAACTC
GATGAAGTGC CGCAAGGCGC CGTGGCGATT TTCAGCGCGC ACGGTGTCGC TCAGACAGTC
GAGCGCGACG CCGAAGCACG AGGTCTCGAC GTGCTCGACG CGACCTGCCC GCTGGTCACC
AAAGTGCATG TGCAGGGCCG CCAGTACGTC GGCGCCGGCC GCACGCTGAT TCTGATCGGC
CACGCCGGGC ACCCGGAAGT GGAAGGCACG ATCGGCCAGA TTCCAGGCAA AGTGCTGCTG
GTGCAGAGCG AGGCCGAGGT CGCGCACCTC GATCTGCCGG TCGACACGCC GCTTGCCTAT
GTCACGCAGA CCACGCTGTC GGTGGACGAC ACGCGCGGCA TTATCGACGC GCTGCTGCGC
CGCTTCACCG ACATCGTCGG TCCGGATACG CGCGACATCT GCTATGCCAC GCAAAACCGC
CAGGCGGCGG TCCGCGAGTT GAGCAAGCAG GTCGACGTGC TGCTGGTGGT GGGCGCAACC
AATAGTTCGA ACTCGAACCG GCTGCGCGAG ATCGGCAGCG AAAGCGGCGT GGCGAGCTAT
CTCGTCGCCG ACGGTTCGGA AGTGAAGCCG GAATGGTTTG CGAACGTGCA GACCGTCGGC
ATCACGGCTG GCGCTTCGGC GCCGGAAGAG ATGGTCAAGA ACGTAATTGA TGCGCTGAGC
GCATTGGGGC CCGTCGATGT CACGACGATG GCGGGCCGTG AAGAAAAGGT CGAATTCAAG
TTGCCATCGA AGCTGATGCA ACCACTCGCT GCACGCGAAG TTTAA
|
|---|
| Protein sequence | MRVILAQPRG FCAGVVRAIE IVDRALQQHG APVYVRHEIV HNRHVVDNLR QKGARFVEEL
DEVPQGAVAI FSAHGVAQTV ERDAEARGLD VLDATCPLVT KVHVQGRQYV GAGRTLILIG
HAGHPEVEGT IGQIPGKVLL VQSEAEVAHL DLPVDTPLAY VTQTTLSVDD TRGIIDALLR
RFTDIVGPDT RDICYATQNR QAAVRELSKQ VDVLLVVGAT NSSNSNRLRE IGSESGVASY
LVADGSEVKP EWFANVQTVG ITAGASAPEE MVKNVIDALS ALGPVDVTTM AGREEKVEFK
LPSKLMQPLA AREV
|
|---|
| |