| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6880 |
|---|
| Symbol | |
|---|
| ID | 6278512 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 3240894 |
|---|
| End bp | 3241730 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642617907 |
|---|
| Product | TadE family protein |
|---|
| Protein accession | YP_001890543 |
|---|
| Protein GI | 187921511 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4961] Flp pilus assembly protein TadG |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.737153 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.128629 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACCGTT CATTTTGCAC TTTGCGGCGC ATCCGGAAAC ACCGCGCGCG ACAATTCGGC
CACGCGCGGA AGACGCGGCA GTCGGGCCAG TCGATGGCGG AGTTCATCAT CGTCGCGCCG
GCGCTGCTGT TTGTCTGTTT CGGCATTGTG CAGTTCGTGC TGCTCTATCA AGCCAAATCG
ACGCTAGACG TGGCCGTTCT TGAAGCCGCG CGTGAAGGCG CGGTCAATAA CGGCTCCATG
CAGTCGATGC GCAGCGGTCT CGCGCGTGGA TTGGCGCCGC TGTATGCGCG TCAGGCCGAC
GCCGGGGGCG TCGCGGCGGC GCTCGCGAGC GCGAACGCCG ATGCCGCCAA TTTCAGCAGC
ATTACGGTTC TCAATCCGAC TCCGGCCGCC ATCCTTGACT ATGCGCGACC CCGCTATTAC
GCGGATCTGG CAGCGACTTA CACGGAGATT CCCAACGATT CGCTCATGTA TCGCGATTCC
TCCGTCCCGC CCAACGCGAC GTCGCACATG AACGTTCAGG ACGCCAACCT GTTGAAAATT
CATGTCCACT ATTGCTATGA CATGTACGTG CCGCTAGTGA ATAAGGTCAT TTATTACGCT
GCCAACGTGA TCGGCGTGAT CGGCACAGGC GGCCTTCTGA CTCGCGAGCC GGTCGGTACA
AATCCGGATC CGTACGGTTA TCCAAAAAAC GGCGACTACC TCTGCAAGGT CAAACTCGTG
GATGGTATCG CGACAGGCCG TTGGCCGATC TCTCTCGATT CCGAGGCCAT GGTCCGTATG
CAGTCGCCGC TCAGGGCGTC GGCATTGAAC GACTCGCCGA ATCCAACAGG AAACTGA
|
|---|
| Protein sequence | MNRSFCTLRR IRKHRARQFG HARKTRQSGQ SMAEFIIVAP ALLFVCFGIV QFVLLYQAKS
TLDVAVLEAA REGAVNNGSM QSMRSGLARG LAPLYARQAD AGGVAAALAS ANADAANFSS
ITVLNPTPAA ILDYARPRYY ADLAATYTEI PNDSLMYRDS SVPPNATSHM NVQDANLLKI
HVHYCYDMYV PLVNKVIYYA ANVIGVIGTG GLLTREPVGT NPDPYGYPKN GDYLCKVKLV
DGIATGRWPI SLDSEAMVRM QSPLRASALN DSPNPTGN
|
|---|
| |