| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6862 |
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| Symbol | prpD |
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| ID | 6278765 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 3213036 |
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| End bp | 3214487 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642617889 |
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| Product | 2-methylcitrate dehydratase |
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| Protein accession | YP_001890525 |
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| Protein GI | 187921493 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
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| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.195603 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.185199 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCTC CGATTTCCAA CGTGCGACCC GACCCGGACT CAGTCCTGGC CGATATCGTC
GACTACGTTC GGGATTATCG GATCGACAGC GCGCTCGCGC TGGAAACCGC GCGTCACTGC
CTGATCGATA CGCTCGGCTG CGGACTCGAG GCGCTTACCT ACCCGGCCTG CACCAAGCTG
ATGGGACCGA TCGTGCCGGG CACGATCGTC CCCAACGGCG CGAAGGTGCC TGGCACGTCG
TTCCAGTTGG ACCCGGTTCA GGCCGCCTTC AATATCGGCG CCATGATCCG CTGGCTCGAC
TTCAACGACA CTTGGCTTGC CGCCGAATGG GGGCATCCGT CGGACAATCT CGGCGGGATT
CTGGCTACGG CCGACTGGCT CTCGCGCAGC GCCATCGCAG CGGGCAAAGC GCCGCTGGCG
ATGAAAGACG TCTTGATCGC CATGATCAAG GCGCACGAAA TTCAAGGCTG TATCGCGCTC
GAAAACTCCT TCAACAAGGT CGGGCTCGAT CATGTATTGC TGGTGAAACT GGCATCGACC
GCAGTGGTCG GTCAATTGCT CGACCTCACG CGCGACGAGC TGATCAACGC GGTGTCGCAG
GCGTTTGTCG ATGGGCATGC GCTGCGCACG TACCGCCACG CGCCGAATAC CGGCTCACGC
AAGTCATGGG CAGCGGGCGA TGCGACCTCA CGCGCCGTGC GTCTCGCGCT GATCTCGAAG
ACCGGCGAGA TGGGCTATCC GTCGGTACTG ACGGCGAAGA CGTGGGGCTT TTACGACGTG
CTCTTCAAGG GCAACGCGTT TCAATTCCAG CGTCCGTACG GCTCGTACGT GATGGAAAAT
GTGCTCTTCA AGATTTCTTT TCCGGCAGAA TTCCATGCGC AAACGGCGGT GGAAGCCACG
ATGAAGTTGC ACGCGCAACT CAACGCTGCG GGAAGGAGCG TGGACGACAT CAGCAAGATC
ACGATCCGCA CGCACGAGGC CGCGATTCGC ATCATCGATA AAAAAGGTCC GCTGAACAAT
CCGGCCGACC GCGATCATTG CATTCAGTAC ATGGTCGCCG TGCCGCTGAT CCATGGTCGC
CTGACGGCCG CGGACTATGA AGATTCGATC GCGCAGGACC CGCGCATCGA TGTGCTGCGC
GCGAAGATGG AATGTGTAGA AGACCCGCAG TTCACGCAGG ATTACCACGA TCCGGAGAAG
CGTTCGATCG CCAACGCACT GACAATCGAA TTCAACGACG GCTCGTCATT CGACGAGGTC
ATAGTCGAAT ACCCGATCGG TCACAAGCGT CGTCGCGAAG ATGGGATTCC GTTGCTGGTC
GAGAAATTCA AGACCAATCT CGCGCGCCGC TTTCCGGTCA AGCAACAACT GGCGATTCTC
GACGTGTCGC TGGATCAGGC AAGGCTCGAA GCCATGCCGG TCAATGAATA CGTCGATCTG
TACGTCATCT AG
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| Protein sequence | MSAPISNVRP DPDSVLADIV DYVRDYRIDS ALALETARHC LIDTLGCGLE ALTYPACTKL
MGPIVPGTIV PNGAKVPGTS FQLDPVQAAF NIGAMIRWLD FNDTWLAAEW GHPSDNLGGI
LATADWLSRS AIAAGKAPLA MKDVLIAMIK AHEIQGCIAL ENSFNKVGLD HVLLVKLAST
AVVGQLLDLT RDELINAVSQ AFVDGHALRT YRHAPNTGSR KSWAAGDATS RAVRLALISK
TGEMGYPSVL TAKTWGFYDV LFKGNAFQFQ RPYGSYVMEN VLFKISFPAE FHAQTAVEAT
MKLHAQLNAA GRSVDDISKI TIRTHEAAIR IIDKKGPLNN PADRDHCIQY MVAVPLIHGR
LTAADYEDSI AQDPRIDVLR AKMECVEDPQ FTQDYHDPEK RSIANALTIE FNDGSSFDEV
IVEYPIGHKR RREDGIPLLV EKFKTNLARR FPVKQQLAIL DVSLDQARLE AMPVNEYVDL
YVI
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