| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6610 |
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| Symbol | |
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| ID | 6279647 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 2917339 |
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| End bp | 2920113 |
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| Gene Length | 2775 bp |
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| Protein Length | 924 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642617642 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001890279 |
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| Protein GI | 187921247 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCGGT GGACTGCCCA GACGCGCACC CTCACGTTCA GTGGTGCCGC GCTTCCCGAA
ATCATCGGCG TCGATTACCG CAGCCGCCAA TGCATCGAAA TCAGGGAGCC GATGCTCACC
GTTCGTCGTC TCCGGGGACG CGAAGCCGTG GGCGAGCTGT TCGAATACGT CGTGGAAACA
GAGGTCGAAA ACCCGGACTT CCTGCAGGAC CCGGAGAGCG TCGCGCAACT CGATCTGGCG
GCCATCGTCG GTACATCGGG CACTGTCGCG ATCCAGGTCG CTGGCATCGG CACCTTTCGA
GCCGGCGCGA AAGGCGACAC GGGGCGCGCG AATGTCGGCG CCGATACGCG CTATATTAAT
GGGGAAATCG TTTCAGCGCG CATCCGGTGC GTTGAGGATC GCGCGGCGGT TTTCGAGTTC
GTATTGCGCC CGTTCGTGTG GCGTGCAACG CTGAATTGCG ATTCGCGCAT CTTCCACGGT
ACCGTAATCG AGGTGCTTGA AGAAGTGCTG CAGCCCTATG TGGGCACCGT CGAGTGGCGC
ATTGGCGGAA TGTGGCCCGG CAAGGGCTAT CCACCGCGCG ACATGATCCG GCAGGCATGG
GAGCCGGACT GGCAATTCGC GTCTTTTTTA ATGGAAGAGT TCGGACTCTT CTACTGGTTC
GAACACCGTG ACGACTTTCA CTCCCTTGTC ATCTCTGACC TGCTGAGTGG TTTCCGTCCA
CATGGCGTAG CCTATGAAAC GCTTCGCTAT CACACCGGAA GCCGCATTGA TGAGGAACAC
ATCAGCGAAC TGTCGATCGC GTACACGCTG ACACCCGGCA AGGCCACGGT CAACGACCAT
AACTACGCGG AGCCGCGCCT CGCAAAGAGT CTCGTACCGA ATCGCGAGAC CTGTGAGGAT
ACGCGCGGTA CAGCGAGCCG GGACATCGAA ATCTACGAAC CTGCCGACTT CGCCCAGCCC
GAGGCGCGGC GCACGGCAGC CGATGCGAAC GACGAGCGGG GTGAAGGCCA GCACCTTGCG
CGGGTCAAAC TCCAGTCGCG GCGCTGCCAA AGTTTGCGCG CAACCGGTAG AGGCCGTCTC
CAGGCACTTC AGCCGGGGCG CACGTTCACG CTTGCGGGCT ATCCGCAGGA GCGCGCGAAC
TGTGAATACA TCGTTCTGAG TTGCGATCTG GACATGACTG AAGTCGGCAC GTCGTCGGGT
CCGACGCGTC AGTACACGGT CAACACGGAG TTTGAACTGC AACCGGCCAA CGAGTATTTC
CGGCTGCCCC AAGTCACGCC CCGGCCGCGC ATCGACGGCT ATGAATATGC CGTGGTGGTC
GCGCCGCAGG ACAAGGAAAT GTACATCGAC TACCGCAACC GGCTGCGCAT CCAGTTCGAC
TGGGACCGGC AGGCGAATCT CGATGGCGCG ACTTCGATCT GGGTGCGCGT CATGACGCAA
TGGCAGGGTG GCGAGCTGGG CGTGGTTGCA CCCGGTCGCG CGGGTCAGAT GGTGCTGGTG
TCGCACGTGC ACGGTGACCC GGACCGGCCT GTCGTCGCCG GATTCGTGGT GGACAAGTTC
AACATGCCGC CGTGGGAACT GCCGGCCAAT GCTGCGTTGA GCGGCATGCG CAGCAAGAGT
CTTGGGTATG GTCTGCGCTC CAATCATCTC GCGTTGGACG ATACACCCGG CAAGATGCAG
GCGCAGCTCG CAAGCGACCA GGCGAATTCG CGGTTTGTAG CGGGCTTCAA CACGCGCATT
GATGGCACGA AGGGGCGCAC CGAGGCGCGG GGTGAAGGGA TCGAGATTGC CACCGATGCG
CACCTTGTAG GCCGGGGCAA CCAGGGCGTG CTGCTTACCT CCGAGGCGCG TGTGGGCGCT
AGCGCTCCCG TAAAGGATAT GGGCGAGACA GTGGCGCGGC TCACGCAGGC GCGGCAGCAG
CATGAGGACC TGTCACGGCT GGCGATTCAG CACAACGCGC AGACGATGGA CGCTAGCCAG
GGCGATGCCA CGAGCATGAT CAAAGCGCAG AACGAAGCAA TCCGGGGTGG ACAGAAGACG
GAGGAGAATC CATCGCCCGA AATGACGCGG CCGGACGTGG TGCTGGCGAG TGCGGCGGGG
ATTGCGACAA CTGCGGCAGA CAGCACGCAC ATGGCGAGCG TGAAGGATCA CGCGATTACA
GCAGGGCGGG ACGTGAGTGT GTCGTCGGGG CGCTCGCTGT TTGCGTCGGT GCGCGGTGCG
ATCAGCCTGT TTGCCTACCA GCTTGGGCTG AAACTAATCG CGGCGAAGGG CAAGGTGGAC
ATCCAGGCGC AAAGCGACCA GATGGCGCTG GCGGCACTCA ATGACCTTAC GATCAGCAGC
ACCGATGGCA GGATCGTGCT GACGGCGGCA AAGGAAATCT GGCTCGGTGC AGGCGGGTCG
TACATCCAGA TCGACGGTAG CGGGATCATC AACGGGTCGC CGGGGGCAAT TCTGGAGAGA
GGTGCCACCT GGGACGTGCC AGGGCCGGAT ACACAGCGCG TGCGTGTGCC TGATCTCCCG
GGAGACAAGA TCCACAGTGC GCAATTTGTT GTCCGCGACC GTAGCGGCAA CCCGTTGCCT
AACTACCCCT ATCAGATCAA GACGGAAAAC GGCCCGACCT GGTTTGGGCG CACAGATGAG
CATGGACATA CAGAGCGGGT CTGGACGGCA AGCCCCCAGG ATGTCGCCGT GTATCCCGCT
CACGAAATGG ACGATGCAGA TGAAGAGGGC GCGAAGGACA ACTGCTGCGA CGTTAAACCT
TCAAAATACG AGTAA
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| Protein sequence | MTRWTAQTRT LTFSGAALPE IIGVDYRSRQ CIEIREPMLT VRRLRGREAV GELFEYVVET
EVENPDFLQD PESVAQLDLA AIVGTSGTVA IQVAGIGTFR AGAKGDTGRA NVGADTRYIN
GEIVSARIRC VEDRAAVFEF VLRPFVWRAT LNCDSRIFHG TVIEVLEEVL QPYVGTVEWR
IGGMWPGKGY PPRDMIRQAW EPDWQFASFL MEEFGLFYWF EHRDDFHSLV ISDLLSGFRP
HGVAYETLRY HTGSRIDEEH ISELSIAYTL TPGKATVNDH NYAEPRLAKS LVPNRETCED
TRGTASRDIE IYEPADFAQP EARRTAADAN DERGEGQHLA RVKLQSRRCQ SLRATGRGRL
QALQPGRTFT LAGYPQERAN CEYIVLSCDL DMTEVGTSSG PTRQYTVNTE FELQPANEYF
RLPQVTPRPR IDGYEYAVVV APQDKEMYID YRNRLRIQFD WDRQANLDGA TSIWVRVMTQ
WQGGELGVVA PGRAGQMVLV SHVHGDPDRP VVAGFVVDKF NMPPWELPAN AALSGMRSKS
LGYGLRSNHL ALDDTPGKMQ AQLASDQANS RFVAGFNTRI DGTKGRTEAR GEGIEIATDA
HLVGRGNQGV LLTSEARVGA SAPVKDMGET VARLTQARQQ HEDLSRLAIQ HNAQTMDASQ
GDATSMIKAQ NEAIRGGQKT EENPSPEMTR PDVVLASAAG IATTAADSTH MASVKDHAIT
AGRDVSVSSG RSLFASVRGA ISLFAYQLGL KLIAAKGKVD IQAQSDQMAL AALNDLTISS
TDGRIVLTAA KEIWLGAGGS YIQIDGSGII NGSPGAILER GATWDVPGPD TQRVRVPDLP
GDKIHSAQFV VRDRSGNPLP NYPYQIKTEN GPTWFGRTDE HGHTERVWTA SPQDVAVYPA
HEMDDADEEG AKDNCCDVKP SKYE
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