| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6230 |
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| Symbol | |
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| ID | 6279662 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 2482140 |
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| End bp | 2483774 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642617285 |
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| Product | peptidase S13 D-Ala-D-Ala carboxypeptidase C |
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| Protein accession | YP_001889928 |
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| Protein GI | 187920896 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCCGA CAATCGATCG ACAGTGGAAA TGTTGGGCTG CAATCGCAAG CGCCGTTCTG
CTGGTGTCGT GCGGCGATTC GCTCAGTTCG AATCCGACGG TTCCCGATTC GATCATGCAG
GTGATGCAAA AACCGGTCTA CAAGAACGCG ACCTGGTCGA TGCAGGTGGT CGATCTCGAC
TCTGGCCATG TGATCTATGA CCTGAATTCG GACGCCCAGA TGTTGGTTGG CTCGGTGCGC
AAGCTCTTTT CAGTCGGCTC AGCGCTGAAT CAACTGGGTG CGCAGCATCA GTTCGTCACA
CCGGTTTACC GGCAGGGCAC GCTCGATGCG GGCGGTACCC TCACCGGCAA TCTGATCCTG
CTGGCAAGCG GCGATCTGAC CATGGGCGGC CGAGCCAACC CGGACGGCAC GATCGCCATC
ACGAACTTCG ATCACAACGA GGCCAACTCG CTCGGCAACG CGATACTCGC CACGCCCGAC
CCGCTCGCCG GCTTCAACTC CCTCGCGACG CAGGTGGCGG CAGCGGGCAT CAAAAAGATC
AATGGCGATG TCGTGATCGA CGATCGCCTT TTCGAGCCGT TCGACTTTCG CGGTGAATTC
AACGTGCGGC CGATCTTCGT CAACGACGAC GTGGTCGACG TCAGCCTGGA CCAGAGCGCC
GAAGGCTCCG CCGTTCCGTT CGACTGGCGC CCCAGAACGG CCGCGTTCAG CGTGCAATCC
GCGCTCGCGA CGGGCAGCGC GGCTTCTCAG CTGGATATCG AACTCGCGCC TGAACTGCCG
TTGTGCATCG GCTCGCCGGG TTGTATCGGC AACATAACCG GCAACGTGCC GGCCGGTTTC
GTGCCGCCAC TGACCAACGC CTACCCGCTG ATCCGCACCT TCCGCGTGAC CGAGCCTTCC
AATTACGCCC GCACGGTCTT CATCGAAGCG CTGGCGCGCG CAGGTGTCTC GGTTACGGCG
GCGCCGGTTG CCGCCAATCC GGTTCAGTTA CTGCCCGCGA AAGGCTCGTA TTCGAGCGCG
ACGCAGGTTG CGCAACTCAC TTCGCAACCA TATGAGCAAT ACGTCCGCTA CGTCATGAAG
GTCAGCTATA ACATCGGCGC CGATACGAGC CTCATGCTGT TCGGTCTCGC ACGCGACGGT
TCGACGACGC TGAGCGGCGC GTTAGCGGCG GAACAGGCGG AGTTGTCCAC TACGTTCAAG
ATCGCGTCGA ACCAGTACCA CTTCATCGAC GGCAGCGGCG GCGGCGACTC GACTGCGAGC
GGCACGGCGG TCATCGCCAT GCTCAGAGGC ATGAGCACGA CGCAGGTCTT TTCGCCCTAC
TTCGACGCGT TGCCGGTGCT GGGCGTGGAC GGATCGCTGG CCACCATCAC CGCGTTCGAA
TCCGATGCGA CGCTTGCAGG AGCGAAAGGC CAGGTGCATG CGAAAACCGG CACGTACGTC
ACGGAGAATC CGAACACGCC GACGTTACCG TTCCTGAGAG GACAATCGCT CGCCGGCTAT
ATCGATGCCA AAAGCGGCCA CCGGATCGCA TTCGTCCTGA CGGTGAACAA CGTTCCTATT
TCGGGCATCA GCGACGTGCT AGCGGTCTTC CAGGACGAAG GCACGATATC GGCGATGCTC
TGGAAACTGC AGTAA
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| Protein sequence | MSPTIDRQWK CWAAIASAVL LVSCGDSLSS NPTVPDSIMQ VMQKPVYKNA TWSMQVVDLD
SGHVIYDLNS DAQMLVGSVR KLFSVGSALN QLGAQHQFVT PVYRQGTLDA GGTLTGNLIL
LASGDLTMGG RANPDGTIAI TNFDHNEANS LGNAILATPD PLAGFNSLAT QVAAAGIKKI
NGDVVIDDRL FEPFDFRGEF NVRPIFVNDD VVDVSLDQSA EGSAVPFDWR PRTAAFSVQS
ALATGSAASQ LDIELAPELP LCIGSPGCIG NITGNVPAGF VPPLTNAYPL IRTFRVTEPS
NYARTVFIEA LARAGVSVTA APVAANPVQL LPAKGSYSSA TQVAQLTSQP YEQYVRYVMK
VSYNIGADTS LMLFGLARDG STTLSGALAA EQAELSTTFK IASNQYHFID GSGGGDSTAS
GTAVIAMLRG MSTTQVFSPY FDALPVLGVD GSLATITAFE SDATLAGAKG QVHAKTGTYV
TENPNTPTLP FLRGQSLAGY IDAKSGHRIA FVLTVNNVPI SGISDVLAVF QDEGTISAML
WKLQ
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