| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6143 |
|---|
| Symbol | |
|---|
| ID | 6279461 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 2391527 |
|---|
| End bp | 2393575 |
|---|
| Gene Length | 2049 bp |
|---|
| Protein Length | 682 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642617200 |
|---|
| Product | transketolase |
|---|
| Protein accession | YP_001889843 |
|---|
| Protein GI | 187920811 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0021] Transketolase |
|---|
| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACCA CCGAAGCCCC GTCTGCCGCA TTGAATGCTT CGCCTGCTTC GATCACGCCG
CAGGTCCAGG TTGCGCAAAC CGCGCCCTTG CCGTTAGCCG ACGCGATCCG CTTCCTTTCC
ATCGATGCGA TTCTGCGCGC CGGCGAAGGC CATCAGGGCG TGCCGCTCGG CATGGCGGAA
ATCGCGACCG CGCTGTTCAC GCGCCACCTG AAATTCAACC CCGCCGATCC GACCTGGCCC
GACCGCGACC GCTTCGTGCT GTCCAATGGT CACGGCTCGC TGCTGCTGTA CTCGCTGTTG
TATCTCACCG GATATGACGC GATCGGGCTG GAACAGATCA AGAGCTTTCG CGAGCTAGGC
TCGCATTGCG CGGGGCATCC CGAGTACGAA CCGGCGCACG GTATCGAGGC GACCACCGGC
CCGCTCGGCC AGGGCATCGC CAACGCGCTC GGCATGGCGA TCGCCGAAGC GTATCTCGCC
GCGAAATTCG GCAGCGATCT CGTCGACCAC TATACGTATG CGTTCGTCGG CGATGGTTGT
CTTCAGGAAG GCATCGGTCA GGAGATGATT TCGCTGGCCG GCCATCTGCA ACTCGGCAAG
CTGATCCTCT GCTGGGACGA CAACCAGATT ACCGACGACG GCAGCACTGC CCTCTCGATC
AGCGAGGACG TCTGCGCGCG CTTTCGCGTC GGCGGCTGGC ATGTCGTCGA GGTCGACGGG
CACGATCTCG GAGCGGTATC GGCCGCACTG ACGATCGCCC GCGCGGACCC GCGGCCTTCG
ATGATTGCGT GCAAGACCGT GATCGGCCGC GGCATCGCGC GTCTGCAAGG ACAGCGCGGC
GGCCACAGCG GCAAGCTGTT CCAGACGGAC GCCGACGCGG CCCGCGACAC ACTCGGTTGG
CCGCACGCCC CCTTCGAGAT ACCCGCGGAG ATTCTCGGCG CCTGGCGCGC GGCAGGACGG
CGAAGCGACC CGCAGTACTA CGCGTGGCAC GAACGTCTCG CCGCGTTGCC CGCCGCGCAG
CGCGACGAGT TCGAACGGGT CCAGGCCGGC TATCTGCCGC AAGGCTGGCG CGACGTGCTG
GACGACTACC GCAAACGCGC CGTGGAGCGC GACGAGCCGC AGCCAGGCAT CACCGTGTCG
GGCGAGATCA GCGACCTGCT CGCGCCGCTG TTGCCGGAAC GCATGGTGGG CTGTGCCGAC
CTCGAAGCGC CCACCGGCCA CAAGCGTCAA TTGCACGCCT TTACTGCCGA GGACCGCAGC
GGCGCCTACG TCCACTGCGG CGTACGCGAA CACGTGATGG GCTCGATGGC CAACGGCATG
GCCGCGCATG GCGGCGTGAT CGCGACCAGC GTCACGTATC TCGCGTTCTC CGACTATCAG
CGTCCGGCCA TGCGCATGGC CGCGCTAATG GGCCTGCCGG TGCACTACGT GTTCAGTCAC
GATTCGATCG GCGTCGGCAA AAATGGCCCG ACGCATCAAC CCGTCGAGAT TCTCGCCTCG
CTGCGCGCAA TGCCGAACAT GCGCGTGCTG CGCCCCGCCG ACGCCGTCGA AGCCGCCGAG
TGCTGGGCGC TCGCGCTCGA ACATCGGCGC GGGCCGAGTA CGCTGGTGTT CGCCCGCCAG
GCGCTGCCGT TGGTGCGCCG TGAATATAGC GCCGAGCCAT TGTCGCAACG CGGCGCTTAC
GTACTCGAAG AGGCCGAGGG CGGCGCGCGT GTCGTGACGC TATTGGCGAC CGGTTCCGAA
GTCGCGCTGG CCGTGGAGGC ACGCCGTCAG TTGCAGGACG AAGGCATCGC GACGGCCGTG
GTGTCCATGC CGTGCTGGGA GATTTTCGAC GAACAGGACG ACGCCTATCG CACCGCCGTG
CTTGGCGCGG GCACCGTGCG AGTCGGCGTG GAAGCGGCGT TGCGCTTCGG CTGGGATCGC
TATCTCGGCG AGCGCGGCGG CTTTGTCGGC ATGACGGGTT TCGGCGCGTC GGCTTCGGCG
GAGACGCTGT ACGAGCACTT CGGCATCACC GCGCAGCATA TCGTCGCTGA AGCGAAACGG
CATCTGTAA
|
|---|
| Protein sequence | MSTTEAPSAA LNASPASITP QVQVAQTAPL PLADAIRFLS IDAILRAGEG HQGVPLGMAE
IATALFTRHL KFNPADPTWP DRDRFVLSNG HGSLLLYSLL YLTGYDAIGL EQIKSFRELG
SHCAGHPEYE PAHGIEATTG PLGQGIANAL GMAIAEAYLA AKFGSDLVDH YTYAFVGDGC
LQEGIGQEMI SLAGHLQLGK LILCWDDNQI TDDGSTALSI SEDVCARFRV GGWHVVEVDG
HDLGAVSAAL TIARADPRPS MIACKTVIGR GIARLQGQRG GHSGKLFQTD ADAARDTLGW
PHAPFEIPAE ILGAWRAAGR RSDPQYYAWH ERLAALPAAQ RDEFERVQAG YLPQGWRDVL
DDYRKRAVER DEPQPGITVS GEISDLLAPL LPERMVGCAD LEAPTGHKRQ LHAFTAEDRS
GAYVHCGVRE HVMGSMANGM AAHGGVIATS VTYLAFSDYQ RPAMRMAALM GLPVHYVFSH
DSIGVGKNGP THQPVEILAS LRAMPNMRVL RPADAVEAAE CWALALEHRR GPSTLVFARQ
ALPLVRREYS AEPLSQRGAY VLEEAEGGAR VVTLLATGSE VALAVEARRQ LQDEGIATAV
VSMPCWEIFD EQDDAYRTAV LGAGTVRVGV EAALRFGWDR YLGERGGFVG MTGFGASASA
ETLYEHFGIT AQHIVAEAKR HL
|
|---|
| |