| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6131 |
|---|
| Symbol | |
|---|
| ID | 6279444 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 2374231 |
|---|
| End bp | 2375700 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642617188 |
|---|
| Product | cyclic nucleotide-regulated small mechanosensitive ion channel |
|---|
| Protein accession | YP_001889831 |
|---|
| Protein GI | 187920799 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
[COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACCC TGAACGATGG TGTGTTGTAT GGGCTGGGCA TTCTGGTTCT CGATTTCCTC
GCCTGGCGCT TCATGACCCG TAAAACGGAC AAGGGGCGTC TTGCTCTGCG CGCGCTGATG
TTCGGCCTGT CCACTTACGT GCTGTTCAGC CACGGAATGA ATCCGCTGCG CGCGGCGCCC
TGGCCGGACG AGCCGGTGCG TCATCTGCTC GCGCAATTGC TGGAGGTGGT GTGGTGGCTG
CAAGGCGCGC GGCTCGTGAC GATCGTGCTG GATCGCACCG TGCTGCCGGA GAGCTGGCAC
AAGGAGCGCC TCTTTCAGGA CGTGTTCGGC GCGCTGGTGT TTCTGGCGGC TGCGGTCGGC
GCGATTGCCT TCGTGCTGGA ACTGCCGGTG CGCGGCCTGC TCGCGACCTC GGGCGCGCTC
GCGGTCGTGC TCGGTCTCGC GATTCAAAGC ACGCTCAACG ACGTGTTTTC AGGCGTGGTG
CTCAACGCCA CGGGACCGTT TTCGATCGGC GACTGGGTGA CGATCGGCGA AGTGGAAGGC
AAGGTGGTCG AAACCAACTG GCGCGCGACG AGCCTGCTCA ATGGGCAGGG CAACATCGTC
GTGATTCCCA ACAGCGTGGC GGCGCGCACC AATATCGTCA ACGCCAACCA GCCTTCGCAT
ACGCACGGCA TCAGCGTGCT GCTGCCGGTC AAGCCGTCGG TGCGGCCCGC GACGGTGCTG
CAGGCGCTCG CCAACGCGGC GGCTAGCTCG GAGAACGTGC TTGCCGAGCC GAAGCCGGTG
GTCAGCGTGC GGCGGGCCAC CAACGACGCG ATCGAGTACG AGATCGTCTG CTATGTCGAT
TCGCTGGGCG AGAAGATCGA AGTGCGCAAC GAACTGTTCG ATCTCGCGCA CAGGCATCTG
TCATCGCGCG GCGTGGTGCT GCATCCGCTT TCCGTGTCCG AACCCGCCAA CGAGGCCACG
GATGAAAAGC AGCGCCTGCT GCGCAGCGTG CTGATCTTCC AGACGCTCGA CGACAGCGGG
ATCGCGGAGT TGGCCGCGCA ACTGACGCGC CATGAGTTCG ACATCGGCGA AACGATCTAC
AGCGCGGCCG ACGAAAACGG CCACGCGTTG CACATTCTGG CGAGCGGCGT GGCGAAAGTC
AGCGTGCCGA AGGACAGCGG CGAAGTCGAA TTGCGCCGGC TCGCGCCGGG CGACTCGATC
GGCCAGTCGG GCATCCTGGC CGGCGTGAAA ACCGGCGTGA TCGTCCATGC GATGACGCGC
GTCACCGTGT TCCAGCTCGA CAAGGCGGCA TTGACGCCGA TGCTCGCGCG GCGTCCCGAG
GTGGGGCGCG AAATGTGCCG GCTGCTGTCC GAACACCATG AAACCGAAAA GCTGCTGCTG
GCGTCGCCGG ACAATGCCGA CGCCGGCCCG GGTGGTCTGC TGCAATGGAT TCGCGACGGC
GTCCGGCGCA TCCATGACCT CGCGTTGTGA
|
|---|
| Protein sequence | MPTLNDGVLY GLGILVLDFL AWRFMTRKTD KGRLALRALM FGLSTYVLFS HGMNPLRAAP
WPDEPVRHLL AQLLEVVWWL QGARLVTIVL DRTVLPESWH KERLFQDVFG ALVFLAAAVG
AIAFVLELPV RGLLATSGAL AVVLGLAIQS TLNDVFSGVV LNATGPFSIG DWVTIGEVEG
KVVETNWRAT SLLNGQGNIV VIPNSVAART NIVNANQPSH THGISVLLPV KPSVRPATVL
QALANAAASS ENVLAEPKPV VSVRRATNDA IEYEIVCYVD SLGEKIEVRN ELFDLAHRHL
SSRGVVLHPL SVSEPANEAT DEKQRLLRSV LIFQTLDDSG IAELAAQLTR HEFDIGETIY
SAADENGHAL HILASGVAKV SVPKDSGEVE LRRLAPGDSI GQSGILAGVK TGVIVHAMTR
VTVFQLDKAA LTPMLARRPE VGREMCRLLS EHHETEKLLL ASPDNADAGP GGLLQWIRDG
VRRIHDLAL
|
|---|
| |