| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5875 |
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| Symbol | |
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| ID | 6277510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 2089196 |
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| End bp | 2090419 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642616938 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_001889581 |
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| Protein GI | 187920549 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0955286 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAAA AAACCCATGC ATCGCTAGCG ATTCCCGCGC GAGAGACGGA AGGCGGCCAC
GCCTTGCCGC CGCGCCATCA GGAATGGAAA CGCGCCAAAA TCGCCATGTG GATCGTGCTG
GCGCTGTTAG CCGTCGGGGC CTTGCGCACC GTGATCGCCA ACATCATGCA GAACCGTTCG
GTGGCGCAGA CCACGAAGCA GAACGCCACG CAGTATGTGA ACGTGGTGAG TCCGACTCAA
ACCGAAGGCG GCGGCAACAC CTTGCTGCCG GGTACGCTGC GCGGCTTCGT CGAATCGCCG
ATCTACGCGC GCTCCACCGG TTATCTGCTG CACTGGTACG CCGATATCGG CACGCGCGTG
AAGCAGGGCC AGCTGCTCGC CGATCTCGAC ACGCCGGAGA TCGACCAGGA ACTCGCGCAG
GCTTTGGCGC AGCGCCAGCA AACCAGTTCG AGCCTCGGCC TCGCGAAAAG CTCGCTGGAC
CGTTGGCAGC AACTGCGTCA GCGCGATGCG GTTTCGCAGC AGGAACTCGA CGAACGGCAA
AGCACCTACT CGCAGGACGT GGCCAACCTC GCCGCCGCCG ATGCCAACGT CAAGCGCCTG
CAGCAGCTCG AATCGTTCAA GCGCATCGTC GCGCCGTTCG CGGGCGTGGT CACGCAACGC
AACGTGGATG TCGGCGACCT GATCGATGCG GGCAGCGGCA CCAGCCGCGC GCTGTTCGCC
CTCGCGCAGT CGGACCCGTT GCGCGTCTAT GTGCAATTGC CGCAGGCGTA CGCGCAAAAC
GTGTCGGTGG GACAGAAGGT GGTGGTGACG CAGGCCGAAC TGCCGGGCCA GCAATTCCAC
GGCACGATCA CGCACATTTC CGGCGCGATC GACGTGCCGA CCCGTTCGCT TCAGGTCGAA
GTGACACTGC CGAATCCTGA CGACAAACTG CGACCAGGGG CGTACGTCCA GGTCGCGGTG
CCGGCCGCGG CACACGCGCA ATTGACGGTG CCGGGCAACG CACTGCTGTT TCGCGCCGAA
GGCCCGCGCG TCGCGGTGGT CGATGCGCGG GGCAACGTGC AGTTGCACAA GATCGTGATC
GCGCAGGACC TCGGCCAGTC GCTTGAAATC GAAAGCGGCA TCGAGCCGAA CGACAAGATC
ATCATCAACC CGAGCGATTC GATCGCAGAC GGCGATCACG TGCAGATCCA GCAGCCGCAG
GCCAACGGCA AGGGGGCGCC GTGA
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| Protein sequence | MTEKTHASLA IPARETEGGH ALPPRHQEWK RAKIAMWIVL ALLAVGALRT VIANIMQNRS
VAQTTKQNAT QYVNVVSPTQ TEGGGNTLLP GTLRGFVESP IYARSTGYLL HWYADIGTRV
KQGQLLADLD TPEIDQELAQ ALAQRQQTSS SLGLAKSSLD RWQQLRQRDA VSQQELDERQ
STYSQDVANL AAADANVKRL QQLESFKRIV APFAGVVTQR NVDVGDLIDA GSGTSRALFA
LAQSDPLRVY VQLPQAYAQN VSVGQKVVVT QAELPGQQFH GTITHISGAI DVPTRSLQVE
VTLPNPDDKL RPGAYVQVAV PAAAHAQLTV PGNALLFRAE GPRVAVVDAR GNVQLHKIVI
AQDLGQSLEI ESGIEPNDKI IINPSDSIAD GDHVQIQQPQ ANGKGAP
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