| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5257 |
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| Symbol | |
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| ID | 6278365 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 1436547 |
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| End bp | 1437842 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642616343 |
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| Product | ABC spermidine/putrescine transporter, periplasmic ligand binding protein |
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| Protein accession | YP_001888986 |
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| Protein GI | 187919955 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.726657 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAAG CGAACGAAAG CCCGGCAGCG GCTGCAACCG ATGTGAAGGA AAAAGGCCTG
TCGCGCCGCA CGTTCATCAA GGGTGCGGTG GCGGCGGCCG GCATTGCCGG TTTTCCGTAC
GTGCAGGCAC AGGAAAAAAT CACGTTGCGC TACCTCGGCA CGGCGGTCAA TCAGAGCGCC
GACATCGCGA AGAAATTCAA GGAAGACACC GGCATCGAGA TTCAATACGT GCCGGTGACC
ACCGACGACG TCGCCAAACG CATCATCACG CAACCGAACT CGTTCGACAT TGTCGACACC
GAATATTTCG CGCTCAAGAA GTTGATTCCG GCCGGCACGC TGGCCGGCAT GGACGCGAAG
CGCATCAAGC TGGCCGACAA GATCACGCCG GTGCTCACGC GCGGCGAAGT CAACGGCAAG
AAGATCGGCG ATCAAGGCAC CGCGCCGAAG AAGGTGATGT TCCTCACCGG CCCGCGCTCC
ACGGAGTTCT CCGCCACGCC GACCGAATGG ATGACGCTGA TTCCCACCAC CTACAACGCG
GACACGCTCG GCATTCGGCC CGACCTGATC AAGCGGCCCA TTGACAGTTG GGCGGAACTG
CTCAATCCGC AGTTCAAGGG CAAAGCGGCG CTACTGAACA TTCCCGCGAT CGGCATCATG
GACTCGGCCA TGGCGATCGA GGCGATGGGC CACATGAAAT ACGGCGACAA AGGCAACATG
ACCAAGGCCG AGATCGATCA GACCATCAAG ATCCTGATCG AAGCAAAACG CGCCGGCCAG
TTTCGCGCGT TCTGGAAGGA CTTCAACGAG AGCGTGAACC TGATGGCCTC GGGCGAAGTG
GTGATCCAGT CGATGTGGTC GCCAGCGGTC ACGAAGGTGC GCACCATGGG TGTCGCCTGC
AAGTTTCAGC CGCTCAAGGA AGGCTACCGT TCGTGGGCGT CGGGCTTCGG TTTCCCGCGT
TCGCTGCAAG GCAAGAAGCT CGACGCCGCC TATGAGTTCG TCAACTGGTT CCAGGACGGC
TGGGCGGGTG CGTACCTGAT GCGTCAGGGC TATTACTCGG GCGTGCTGGA AACCGCGAAA
ACGCACATGC AGCCCTACGA ATGGGACTAC TGGATCGAAG GCAAGCCGGC AGCGCAGGAC
ATCAAGGCGC CGGACGGCCA GTTGCTCGAA AAGACCGGCA CCGTGCGCGA CGGCGGCTCG
TACAACCAGC GCATGGGTGC GATTGCCTGC TGGAACGCGG TGATGGACGA GAACATCTAT
ATGGTCCAGA AGTGGAACGA GTTCATCGCG GCCTGA
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| Protein sequence | MSEANESPAA AATDVKEKGL SRRTFIKGAV AAAGIAGFPY VQAQEKITLR YLGTAVNQSA
DIAKKFKEDT GIEIQYVPVT TDDVAKRIIT QPNSFDIVDT EYFALKKLIP AGTLAGMDAK
RIKLADKITP VLTRGEVNGK KIGDQGTAPK KVMFLTGPRS TEFSATPTEW MTLIPTTYNA
DTLGIRPDLI KRPIDSWAEL LNPQFKGKAA LLNIPAIGIM DSAMAIEAMG HMKYGDKGNM
TKAEIDQTIK ILIEAKRAGQ FRAFWKDFNE SVNLMASGEV VIQSMWSPAV TKVRTMGVAC
KFQPLKEGYR SWASGFGFPR SLQGKKLDAA YEFVNWFQDG WAGAYLMRQG YYSGVLETAK
THMQPYEWDY WIEGKPAAQD IKAPDGQLLE KTGTVRDGGS YNQRMGAIAC WNAVMDENIY
MVQKWNEFIA A
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