| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5205 |
|---|
| Symbol | |
|---|
| ID | 6278542 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 1377952 |
|---|
| End bp | 1381758 |
|---|
| Gene Length | 3807 bp |
|---|
| Protein Length | 1268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642616291 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001888934 |
|---|
| Protein GI | 187919903 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.613528 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCT CAAACGGTGA TTCGTCGCAT CATGTTAATC AGGATTCTTA TGCGTCAGGT
GAGGACGCCA GCGTGTCCCA AGAAGACACT GAAAGCTCGG TCGATAAATC CGGCGCCTCG
TCCGCGCCTT CGCAGGATAC GTCGCAAGCG GATAGAGCAA AGAAACTTCC GATCGCCCCC
CAGCCACTCG ATCAAAGGAG CGCCGCCGCT GCTTCAACGC CCAGTCGCTC AAGCGGTACG
GACTCGGCGC GCACTGCGGG GTCCGGTCGT TCGAGCGGGA CGACCTCTAC CGCGGCGACG
TTGTCGAGGG GCGCGACTGG AACCACCCCG TCGACTGGCG GCGCGGATAT CACGCATTCG
GACACGCTGC CTGGCGCCAC CGCCGCAGAG TTCACGGACC TCCTTAAAGA ATACGACACG
GGTGACCACG CCGCTCACAA GAATTCGGAC CGGAACATGG AGGTTGCAAA ATACATGGAA
TTTGGTGTTG GACTGGAAAT GACGGGTTAT CCCCCTGACG TGGTCCGGTT CGAAAAAAGC
CAGCTTGATG TCCGAGGCCT GTTGGTTGAT TTGCCTTTGA GCCAGCGCGA ATTCTACGGC
AGCGCGTTAG CCACATTGAG CGCGGCCTAC AAGCTCGAAA CTGACCCAAA AAAGCGACTT
GCGATCCTGG AGAAAGCTCT TGAACTGGAC GGCGTCATCC GTAATGCATC CGCTCGTGCC
GCGAACGATC CTGTGGACCG GGTGCTTAGC ATTTTTCAAC CTCCGATGGG CGAAGGCTAT
CTGAGCCTAA GCGGCCGGGA AGACGTCGAC CGACTCGCAC GGCTGCAAGA AGACTTCCTG
GATGCACGCG ACCCCGCCGA ACGGAAAGCG ATTTTTAAGC TGGCCGTCGA GATCAAGGCG
CGCTTGCAGC AGCTAATCGG TATAGCAGTG AACGTGGACC AATACGGGCA ACTCGAACAG
TGGGAGGAAG CCAATAAGGA AGTCGACCGT ATTCTGAAGG AAGCAGAAGC GCAGACCGAT
CCAGCAAAGC GCTACGAACT GATTGGTCGT CAGCTATTTC AAATCACTCC CGGGCAGGAC
CGTTTGAAAG ATAAGGTCCT GCTGGCCTTT ACGCAACGTA TGTACACTTC GGCGGAACTG
CGGAACAAGC TGAATGCCTG GCACATTCAG GTAACCAGCC CACTGAATGC TCACGGGGTG
GGAGGCCCCA AGAGGTACAC GGATATTCTT GGGAAGCTGC CTCCCGTGAG CGACGACTAT
GTACGGGATC TTAGCGACCT GTACACCGAT GTCCTGAGCG ACACCAGTCA CAGGAACCAT
TCCATCACCC CCAAGGTACG GGCAGCAAGG TTAGCCACGC AAATACTGGA AGGCGTAATG
CGAGTCATGC TCGAGATGAC GCCCATAGGT TTTCTGGCTG ATCAAATACC TTCGACCCTT
CCCGACAACG TGCGCATGGG GCTCGAATTC GGCGGGATGA TGCTCGACTT AATTACCGGC
GCGGGTGTTG GCAAACAGGT GGGCCGCGGG GCTAAAGCGC TTGCAGCGGC AGCGAGAAAA
ACCGAGCTTG ACAATCTGGC CGGGAAAGTG GTGCGCGCTG GAGGCAAAGG CCTCGTTGAT
GATGCCAGTG AGCGCATTGC CAGGGAGACG CTGGCAGATG AGCGGTTGAG TCCCGAAGCA
AAGGCTACCG CGCAAGTGCT CGAGAGGAAG GCTCTCGTGG AGACGGGGCC TGCCGTCGAT
CCCGTCAGCG AACTCGCGCA TGAAGCGGTT GGCATCAACT CCTATGGATC GCTTGCTACC
TATGCCGACC CGCATGTCGT TCCCGGCAGT TTACGCCGGG GGGCTCAACC GGGAATTCTC
GAGGATTCCA AGGGCGACCG GTATATCGAA CTCGGAGGAA AGGCCTATCG CGTCCGCTTC
GACAGGGATA ACGACACCTG GCGCGTGTTC GATCCGGCAG CGTCGTGGAG ACCACAATAT
CCCGTGCGGT TGAACGAAAA AACCAACACC TGGGAAGTGC ATGGAGACGT CGGTCTGATG
GGAGGAAAGC CGAAAATCAG CGATGGGGTA GTACAGGAAA TCGTAAGGCT ACTCAAGGAA
GGTGACATGT CACAGCAGCA AATCGCAACC AGAATGGGGG TGTCGATGGC TTTCGTTAGA
AACACCGCCA GCGACTACAG TATCAGGCAG TCTGCTCCTG GCTCGGTGCG CAACCAGCCC
ATCCCACCCG CGACCAGAGA AGCGGCCATC AGGCTGTTGA GAGAAGGGGA CTTGTCACGC
AGCGACATAG CAGCAAGATT GGGGATATCG CGTGCGTTCG TCTCCACGCT TGCGAAAAGC
AACAATATTG CCGTCCTTGC GAACACGATT TCTCCAGAGA TTCGATTGCA AGTAGAAAAA
CTCCTCGCCG AAGGGAGCCT GTCGACCACT GAAATAGGAA GAAAAGTCGG GATATCGGCG
AATTCGGTAC TGAACATCAG AAGCGGGATG AAGTCGCTCC CGGCCCACAG ATGGCACCGA
AAAATCACAG CCGCCGTCCG TGCGGACATT ATCCGGCAAC TCACGGAAGG GGCGAGCCAG
AGAGAGGTTG CCCGGGCCAA CGGCGTATCC AGGAATTCCG TTTGGCGAAT CGCGCGGCAA
GAACGATTGC CTGTGAAAGT TCTGCGGGCG CCCGCGACTC CTGAGCAGAT CGACCAGGTA
TTCGCCCTGC GAGGTCAGGG AAAAACTATT CGAGTGGTCG CCTCCACTGT TGGTTTATCG
GAGACCACGG TCAAAGATAT TTGTGCCAAT GTCAACGCTG ATACCTACAA GAGGTCGTGG
TGGGACACGA CGCCAGAAAA GCGAACAGCA GTGCTTCGGC AACTGGATCA GGGTAAAGCT
GCGAAAGAGA TTGCCAAGGA ACAGGGCCTT CCAGTCGAAA CGGTCCGTGG AATCGCAAAC
CAGCAGCGAA TGGCGAGAGA TTCGCTGGCC AGCGAGCTGT TGCGGGAGGG ACAGTCCTTC
ATTGAGGTTG GTGACAAGCT AGGCATCCCT CCAGAGTATG TCCTTCGCTT GCGCCACAAG
GTTCCCCCGG GCACACACGA TATCCACGAC ATCCAACTGA ACTCCGCGGA TGGGGCTGTG
GCGGAGGATA TGTTTAAGAA AGGCTATACC AGAGAAGACG TCGCCGAGAA ATTAGGCATC
TCTCTTTGGA AAGCCCATAG TCTCGCCAAT GAATATCGCA GCAAAACCAT GGACTCTGTC
ATGCCAAAGC AACTGGCGGA TCTCGTGGCT GCGCTCGACG ATCAGGACCG CACCTTCACG
ACGGGTGAAC TGGCGAGAGC CACTGGTTTG CCGGAGACGA CGGTGATGGT CGTCGAACGC
GAATACGAGA TGGGCTCCAT TGTCTCGCAC GCCGCGTCGC CGCAACCGGG GCCGTCCCAT
GGTACAGCGA GCGTTGGCGT TTCGTATGAA TGGATACGGC CACTCACCGC GGAGCAGGAA
GGGCAGGCGA TCCGCGCGCT AGATGACGGG CAGCGGCTAA AGCAGGTCGC GGACGGCCTA
CACGTGGACG TGGCGGCGGT TGAGAGGTTG TATGAACAAG ACCTTCCTCT GGTGGCACCT
GCGGACGACC CGATCGACCC GCTTCCCGCT GCTGCGCCTG CTCCAACAAC ACCTTCCACG
ACAACGCCTC CACCAGCAAC CGTAGTGCTA AGTGAAGCCG ACAAGATCGA GATCCGAAAG
CTTGCGAGGG ACGACCAGCT AAGTCCCGAG TTCATCGCTA ATTTGTTTGA GATACCACTG
GACGAAGTCA AAAAGGTCCT GGCGTGA
|
|---|
| Protein sequence | MKISNGDSSH HVNQDSYASG EDASVSQEDT ESSVDKSGAS SAPSQDTSQA DRAKKLPIAP
QPLDQRSAAA ASTPSRSSGT DSARTAGSGR SSGTTSTAAT LSRGATGTTP STGGADITHS
DTLPGATAAE FTDLLKEYDT GDHAAHKNSD RNMEVAKYME FGVGLEMTGY PPDVVRFEKS
QLDVRGLLVD LPLSQREFYG SALATLSAAY KLETDPKKRL AILEKALELD GVIRNASARA
ANDPVDRVLS IFQPPMGEGY LSLSGREDVD RLARLQEDFL DARDPAERKA IFKLAVEIKA
RLQQLIGIAV NVDQYGQLEQ WEEANKEVDR ILKEAEAQTD PAKRYELIGR QLFQITPGQD
RLKDKVLLAF TQRMYTSAEL RNKLNAWHIQ VTSPLNAHGV GGPKRYTDIL GKLPPVSDDY
VRDLSDLYTD VLSDTSHRNH SITPKVRAAR LATQILEGVM RVMLEMTPIG FLADQIPSTL
PDNVRMGLEF GGMMLDLITG AGVGKQVGRG AKALAAAARK TELDNLAGKV VRAGGKGLVD
DASERIARET LADERLSPEA KATAQVLERK ALVETGPAVD PVSELAHEAV GINSYGSLAT
YADPHVVPGS LRRGAQPGIL EDSKGDRYIE LGGKAYRVRF DRDNDTWRVF DPAASWRPQY
PVRLNEKTNT WEVHGDVGLM GGKPKISDGV VQEIVRLLKE GDMSQQQIAT RMGVSMAFVR
NTASDYSIRQ SAPGSVRNQP IPPATREAAI RLLREGDLSR SDIAARLGIS RAFVSTLAKS
NNIAVLANTI SPEIRLQVEK LLAEGSLSTT EIGRKVGISA NSVLNIRSGM KSLPAHRWHR
KITAAVRADI IRQLTEGASQ REVARANGVS RNSVWRIARQ ERLPVKVLRA PATPEQIDQV
FALRGQGKTI RVVASTVGLS ETTVKDICAN VNADTYKRSW WDTTPEKRTA VLRQLDQGKA
AKEIAKEQGL PVETVRGIAN QQRMARDSLA SELLREGQSF IEVGDKLGIP PEYVLRLRHK
VPPGTHDIHD IQLNSADGAV AEDMFKKGYT REDVAEKLGI SLWKAHSLAN EYRSKTMDSV
MPKQLADLVA ALDDQDRTFT TGELARATGL PETTVMVVER EYEMGSIVSH AASPQPGPSH
GTASVGVSYE WIRPLTAEQE GQAIRALDDG QRLKQVADGL HVDVAAVERL YEQDLPLVAP
ADDPIDPLPA AAPAPTTPST TTPPPATVVL SEADKIEIRK LARDDQLSPE FIANLFEIPL
DEVKKVLA
|
|---|
| |