Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_4847 |
Symbol | |
ID | 6279918 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 963065 |
End bp | 966523 |
Gene Length | 3459 bp |
Protein Length | 1152 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642615934 |
Product | glucose-methanol-choline oxidoreductase |
Protein accession | YP_001888582 |
Protein GI | 187919551 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000971365 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.0494922 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCGCT TATCGAGCGT CGTAACTGCA ATCCAAGCGC ATTACGACGT GGTTGTGGTG GGTTCCGGCT ACGGCGGCGG GATCGCCGCG AGCCGTATGG CGCGCGCCGG GCGCCGCGTG TGTGTGCTCG AACGTGGGCG CGAGTTCATG GCCGGTGAAT TTCCCCGCAC GCCGTTTCAG GGCGCCGAAG AAGTGCAATA CAACACGGCG CTCGCACATA TCGGCTCGCC GCTGGCGTTG CTCGAAGTGC ATGTGAACGA CGACGTAAAC GCGGTAGTCG GCTGCGGTCT CGGCGGCACC TCGCTGATCA ACGCGAACGT CGCGCTCGAA GCCGATCCGC GCCTATGGGA CGACCCGCGC TGGCCGGCCG CCTTGCGCGC CGACAAGGCG GGACGCGACA AAGGGTACGC GTCCGCGCGA GCAATGCTGC AGCCGTCGCC GGTGCCGCAG AGCTATCCGG CCTTGCCGAA ATTGCAGGCA CTTGAGAGAT CGGCGCAGGC GCTCGGCATG GAAAACGAGT TCTCGCGTCC GGAGATCACT GTCACCTTCA ATGACCGCAC GAATGCCGCG GGTGTCGAGC AGAAGGCTTG CGTCGGTTGC GGCGACTGCA ATTCCGGCTG CAATTACGAC GCCAAGAATT CGACGCACAT GAACTATCTG CCCGACGCCG TCGCGCACGG CGCGCAGATT TTCACGGGCA CCGCCGTCCA TTCGGTGCTG CGCGACGCAG CCACGGGAAA ATGGATCGTG GGTTACCAGC TGGTGAGCCT TGGCCGCGAA AGCTTCGGCG CGCCGGATCT GTTCGTGAGC GCCGATATCG TCATCGTATC GGCCGGCACG ATCGGTTCGA CCGCGTTGCT GCTGCGCTCG CGCAAGCAGG GCTTGAGCGT CTCCAACATG CTCGGCAAAC ACTTCACCGG CAATGGCGAC GTGCTCGCCT TCGCCTACAA CACCGAGCCG GTGATCAACG GCGTCGGCTG GGGCGCGCAT GAAAAAGGCG AGATTCCGCC GGTCGGGCCG ACTATCACCG GCCTCATCGA TCATCGCGAG ACGCCGAATG TCAGAGACGG CTACGTGATC GAAGAAGGCT CGCTCGCCGG TCCGGTGGGC GCGGCGCTGG TCGGCCTGCT CGGCGCCGCC GCGCCGCTCG TAGGGGTGGA TGTCGCGCCG CGCTCCGTCG CGGAACAGCT CGCCTACGAC GCCCGCGTCG CCACGAGCTT TCTGCGCGGC CCCTATCACG GCGCGCTCCA TCACACGCAA AGCTACCTCG TCATGGCGCA CGACGACGAG AACGGCGAGA TCGACGTGGA CGACAAAGGC CAGCCGCGCA TCGTGTGGGA GAACGCCGGC AAGCAGCCGA TCTTCCAGGC GGTCGAAGAG GTGCTCAAGC GGGCGACCGT GCCGCTTGGC GGCAAATACA TGCGCAATCC GATTTCCACC GATATTCTCG GCAATCGCAC CGTCACCGTG CACCCGCTCG GCGGCTGCGG CATGGGCGAA GATGCGGAAC ACGGCGTGGT CGATCATATG GGCCGCGTGT TCTGCGGCGC CACGGGCAAC GCGGTGCACG ACGGACTGTA TGTGATGGAC GGCGCGGTTA TGCCCATGTC GCTCGGCGTC AATCCGCTGC TGACGATTTC CGCGCTGACC GAACGCAATT GCGAGCTGCT GCTCGCCACC CACCCGCTGA ACGCCGCGCC GGCGGAAGGC GCCGCCGTTA CGCCGACCCT GCCGCCTCCG CCGACGCCGC AGGCCGCGTC CTCGTCATTG ACGCCCTCCT CGCCGCAAAA GATCGGCCTG CACTTCACCG AAACGATGGT CGGCACCTAC ACGCCGAACG TTGCGGGCGA AGCGGCCACG AGCCCGATGG AATTCACGCT GACCGTCGAA TCGGAAGACC TTGCCGACAT GATTAGCAAT CCGCAGCATC TGGCGCAAAC GGCCGGCACG CTGACCTGCC CCGCGCTCTC CGCGCAACCG ATGACGATCT CCAACGGCAC CTTCAATCTG TTCGTGGTCA ACGAGTCGGA CGTGGACGAG CGCAACATGA ATTACCGCAT GACGCTCAAC GCCACCGAAG GCAAGACGTA CTTTCTGAGC GGCAAGAAGA TCATCACGCG CACTTCGCCG ATCAATCTAT GGGAGCAGAC CAACACGCTC TATGCGGAGG TCCGCGAGTC GGCGCAAGCC GATGCGCCGC TGCTCGGCAA GGCGACACTG ATCATCACGC CGGAAAATTT CCTCAAGCAG CAGCGCACGC TCGAAGTCAC CCACGCGCCG GATCTGAAGA CGCGTCTCGA ATGGACCCTG AAGTTCGGCA AGTTTTTCGC GGGCGTGCTG TTCACAGAAT ACGGCGGCGT AGCCGCACCC TTGCAGTATT TCGACCCGAA AGCGGAACCG CGTCTGAAGC GCGCGTTGCG TGCGCCGGCG CCGCAAATCG TCTTCTTCGA TACGCCCGAC GGCACGAAGC TCAGACTCAC GCGCTATCAC GACCCCGCGC GCAAAGCGGC GCGTCCGGTG CTGCTGATTC ACGGCTCGGG CGTATCGAGC CGCATCTACT CCACCGACCT GATCGCGACC AACATGGTCG AATATCTGTT CGCCGCCGGC TACGACGTGT GGCTCGTGGA TCTGCGCGTC AGCATCGAAA TGCCAAGCGT GTTCGTGCCG ACCAATGTCG ACAAGGTGGC GCGCGAGGAC ATTCCGTCGG CGGTCGCCAA GATCCGCGAA TTGACCGGCG TCCCGGAGAT TCAGGCGCTC GGGCACTGCA TGGGCGGCGT GGCGCTGACC ATGTCGCTGC TGTATGGACT CGAAGGCGTG CGCTCGGTGT TCATTTCGCA GGTGTCGGCG CATCCGGTGC CGGGCACGCT GGAGAAGATC AAGGCTGGCC TGCATATTCC CGACTTCATG GAACATCTCG GGCTGATGGA CGTGACCGCG TATACGGAAC ACAAGTCGTG GCCGCAGAAC CTGCTCGACG AAGCGCTCAA GTTTTACCCG CTCAATCATA AGGAAGGTTG CGGCAATCCG ATCTGCCATC GCGCGACCTT CCTGTATGGC CTGCTCTACG AGCATGAACA GTTGAACCAG ACGCTTCACT CGAACCTGCA GGAAATTCTC GGTGTGCACG ACGTCGGCGT ATTCAAGCAT CTGGCCACGA TGGTGAGAGC ACACAAGGTG GTCGATGCCG AAGGCAAGGA TGTCTATCTC ACCGGCACCG ACGGCATGAA AGGACTGGAG GGCATGCGCC GGCCGATCGG GTTCATTCAC GGCGATAAAA ACGAAACCTA TCTGCCGATC AGCACGCAAC TCACCTACGA GATGCTGGTC AAGCATTTCC CCGAGCAGCC CTACGAGCGA ACCATCATTC CCGGCTATGG ACACATCGAC TGCATCTTCG GGAAGAATGC CGCCTTGGAT GTCTATCCGA TAATCGTGAA GTATCTGGAC GCGCATTGA
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Protein sequence | MNRLSSVVTA IQAHYDVVVV GSGYGGGIAA SRMARAGRRV CVLERGREFM AGEFPRTPFQ GAEEVQYNTA LAHIGSPLAL LEVHVNDDVN AVVGCGLGGT SLINANVALE ADPRLWDDPR WPAALRADKA GRDKGYASAR AMLQPSPVPQ SYPALPKLQA LERSAQALGM ENEFSRPEIT VTFNDRTNAA GVEQKACVGC GDCNSGCNYD AKNSTHMNYL PDAVAHGAQI FTGTAVHSVL RDAATGKWIV GYQLVSLGRE SFGAPDLFVS ADIVIVSAGT IGSTALLLRS RKQGLSVSNM LGKHFTGNGD VLAFAYNTEP VINGVGWGAH EKGEIPPVGP TITGLIDHRE TPNVRDGYVI EEGSLAGPVG AALVGLLGAA APLVGVDVAP RSVAEQLAYD ARVATSFLRG PYHGALHHTQ SYLVMAHDDE NGEIDVDDKG QPRIVWENAG KQPIFQAVEE VLKRATVPLG GKYMRNPIST DILGNRTVTV HPLGGCGMGE DAEHGVVDHM GRVFCGATGN AVHDGLYVMD GAVMPMSLGV NPLLTISALT ERNCELLLAT HPLNAAPAEG AAVTPTLPPP PTPQAASSSL TPSSPQKIGL HFTETMVGTY TPNVAGEAAT SPMEFTLTVE SEDLADMISN PQHLAQTAGT LTCPALSAQP MTISNGTFNL FVVNESDVDE RNMNYRMTLN ATEGKTYFLS GKKIITRTSP INLWEQTNTL YAEVRESAQA DAPLLGKATL IITPENFLKQ QRTLEVTHAP DLKTRLEWTL KFGKFFAGVL FTEYGGVAAP LQYFDPKAEP RLKRALRAPA PQIVFFDTPD GTKLRLTRYH DPARKAARPV LLIHGSGVSS RIYSTDLIAT NMVEYLFAAG YDVWLVDLRV SIEMPSVFVP TNVDKVARED IPSAVAKIRE LTGVPEIQAL GHCMGGVALT MSLLYGLEGV RSVFISQVSA HPVPGTLEKI KAGLHIPDFM EHLGLMDVTA YTEHKSWPQN LLDEALKFYP LNHKEGCGNP ICHRATFLYG LLYEHEQLNQ TLHSNLQEIL GVHDVGVFKH LATMVRAHKV VDAEGKDVYL TGTDGMKGLE GMRRPIGFIH GDKNETYLPI STQLTYEMLV KHFPEQPYER TIIPGYGHID CIFGKNAALD VYPIIVKYLD AH
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