| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4306 |
|---|
| Symbol | |
|---|
| ID | 6280098 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 357489 |
|---|
| End bp | 358082 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642615400 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001888053 |
|---|
| Protein GI | 187919022 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.331066 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAATAC TGATTGTCGG TGCAACCGGT CTGATCGGCG GCGAGGTGGT CAAGTTGCTC
GCCGCCGAAC ACGATATCGT CACCGCGAGC CGCAAGGGTT CGGATCTCCA CGTGGATCTG
TCGAACAAAG GCAGCATCGA ATCGATGTAC CAGCAAGCCG GCACGCTCGA CGCGGTCATC
TGCACCGCCG GCGCAGCGAA GTTCGCCCCG CTCGACTCAC TCTCCGACGA CGATTTCTCG
TTCAGTCTTA CCAACAAATT GATGGGCCAG GTCAATCTGG TGCGCTGCGG CGCGGCACAC
GTGTCGCAAG GCGCGTGCTT CACGCTGACG AGCGGCACGC TCGCACAGCA CCCGATGGAA
GGCAGCGCGG CCGTCAGCAT CGTGAATGCC GGCGTGGAAG CGTTCGCGCG CTCGGCGGCA
CTCGAGCTGC GTGGCAAAGC CCGCGTCAAC GTGGTCAGCC CGGGCTGGGT CGCCGAGACG
CTCGAATCGA TGGGCCGCGA TCCGTCGCAA GGCGTGCCGG TTGCCGTGGT GGCGCAGGCC
TACAAGCGCA GCCTCAATGG CAGCGCGAGC GGCGACGTGA TTTCCGCCTC GTGA
|
|---|
| Protein sequence | MRILIVGATG LIGGEVVKLL AAEHDIVTAS RKGSDLHVDL SNKGSIESMY QQAGTLDAVI
CTAGAAKFAP LDSLSDDDFS FSLTNKLMGQ VNLVRCGAAH VSQGACFTLT SGTLAQHPME
GSAAVSIVNA GVEAFARSAA LELRGKARVN VVSPGWVAET LESMGRDPSQ GVPVAVVAQA
YKRSLNGSAS GDVISAS
|
|---|
| |