| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4270 |
|---|
| Symbol | |
|---|
| ID | 6279599 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 319331 |
|---|
| End bp | 320455 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642615364 |
|---|
| Product | high-affinity nickel-transporter |
|---|
| Protein accession | YP_001888017 |
|---|
| Protein GI | 187918986 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2215] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.577048 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.743573 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAATG TTTCGTTGCG TCGCGGGATC CGCTACAGCG CATTGATTGT GATAGCGCTC
GTGATCGTCG CCGCCCGCAG CGTCGGGGCA CAGACAGTCG ATGTGTTTGG CAGGACATCG
ACTGGGACAC CCAGCGCCGC CAACGTTCAG ACTCCGGCGT CTCAGACGGC TCCGGAGGAT
CATCTCGTCG CGCTGGAGCC ATTACGGCGC GCGGTCGCGG CCAGCATCGC TCTGCAGAGC
CGCCTGAATG CCCAGCTTCA GGACAAGCTC GCCGAGCAAC GCAACGGCGC GAACATGCAG
GCTGCCTGGA TCCTCATGTT GCTGTCATTC GGCTACGGCG TCCTGCATGC GCTCGGGCCC
GGACATGGCA AGCTGGTCAT TGGCACATAT CTGATTTCGC ACCGTGCGCG CGTGGGCCAT
GCGGTTGCGC TCAGTATGTG GAGCGCGTGT GTGCAAGCGA TCTCCGCGAT CTGCCTGGTC
GGTGGTGCGG CGTGGCTTGC ACACGCGGGG CTAGGCGGCG TGATGACGCA CGCGGCGACA
CTCGATCTGG TCAGCTATTT TTCGCTACTA TGCGTCGGTC TCTTCACTGC CTGGTCGATC
GTGACGCGCC GCGACTGTTG CGACGAAGGG CGTGTCACGC TCGTCCACAA ACGCCGCCCG
GGGCTCTTCG CGACGGAGCA CGCCGACGAC GACACCCAGC AGGGCGCCTA TCTGGCTGTA
CGGATGCCAC CGCGCCGGCG CTCGATCAAC TGGACATGGG CGGACAAGAG GGCAGGGAAT
ACCTGGATCG CGCGTCAGAT CGTCCTGACC GGGTTGGCGG TGGGCGCGAG GCCTTGCGTC
GGTGCGATCT TTGTTCTCAT CGCGGCGCTT GCCAACGGCA TATTCATAAT CGGCGTCCTG
TCGGTGTTCA CGATGGCCGC GGGGGTGTCG TTGACCGTAT TGGCAATTGG TCTGGCGAGC
CTCGGTATGA ACCGGGCGGT GTCGAGCCGG AGTGTCGCGC GCAGGGAGGC ACTACAAACG
ATCCGTACGC GCTTCGCGCT CGCGGGCGCA GTTTTCATCA CGCTGTTCGC TGCCTGGCAG
GTGTTCGCGC TACTGGCCGG CTGGCAGGTA GCCGGGCTCG TATGA
|
|---|
| Protein sequence | MLNVSLRRGI RYSALIVIAL VIVAARSVGA QTVDVFGRTS TGTPSAANVQ TPASQTAPED
HLVALEPLRR AVAASIALQS RLNAQLQDKL AEQRNGANMQ AAWILMLLSF GYGVLHALGP
GHGKLVIGTY LISHRARVGH AVALSMWSAC VQAISAICLV GGAAWLAHAG LGGVMTHAAT
LDLVSYFSLL CVGLFTAWSI VTRRDCCDEG RVTLVHKRRP GLFATEHADD DTQQGAYLAV
RMPPRRRSIN WTWADKRAGN TWIARQIVLT GLAVGARPCV GAIFVLIAAL ANGIFIIGVL
SVFTMAAGVS LTVLAIGLAS LGMNRAVSSR SVARREALQT IRTRFALAGA VFITLFAAWQ
VFALLAGWQV AGLV
|
|---|
| |