| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4146 |
|---|
| Symbol | |
|---|
| ID | 6279922 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 185392 |
|---|
| End bp | 186102 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642615246 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001887899 |
|---|
| Protein GI | 187918868 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.235673 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACAT CACAAAAAGT CGTTGTCGTT ACGGGCGCAT CGCAAGGCAT CGGCGCCGAA
CTGGTCAACG CGTTTCGCAA GCTCGACTAC CGCGTCGTCG CAACCGCACG TTCGGTCAAG
CCCTCGGAAG ATCCGAACAT CCTGACTGTG GCAGGCGATA TCGGCGAACC GGCCACCGCG
CAGCGCGTGA TTCGTGAAGC CATCGCCCGT TTTGGCCGCA TCGACACGCT CGTCAACAAC
GCCGGCATCT TCGTTGCCAA GCCCTTCACC AGCTATACGG CCGAAGACTA CGCGAAGGTC
ACCGCGGTGA ACCTCAACGG CTTCTTCTTC ATCACGCAGC TGGCCATCGC CGAAATGGAA
AAGCACGGCA GCGGCCACGT GGTCAGCATT TCGACGAGTC TCGTCGACCA CGCCATCGAC
GGCGTGCCCT CGGTGCTGGC CTCGCTGACC AAGGGCGGCC TGAACGCGGC CACGAAGTCC
CTCGCGATCG AATACGCGAA GAAGGGCATC CGCGCGAACG CCGTCGCGCC GGGCATCATC
AAGTCGCCGA TGCACGCTGA AGAAACCCAT GCGGCGCTCG GCGCATTGCA TCCGGTCGGG
CACATGGGCG AAATGAGCGA TATCGTGAAC GCTGTGCTGT TCCTGGACTC GGCGCCGTTC
GTGACGGGCG AAATCCTGCA CGTCGACGGC GGCCAGAGCG CAGGCCACTG A
|
|---|
| Protein sequence | MSTSQKVVVV TGASQGIGAE LVNAFRKLDY RVVATARSVK PSEDPNILTV AGDIGEPATA
QRVIREAIAR FGRIDTLVNN AGIFVAKPFT SYTAEDYAKV TAVNLNGFFF ITQLAIAEME
KHGSGHVVSI STSLVDHAID GVPSVLASLT KGGLNAATKS LAIEYAKKGI RANAVAPGII
KSPMHAEETH AALGALHPVG HMGEMSDIVN AVLFLDSAPF VTGEILHVDG GQSAGH
|
|---|
| |