| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2139 |
|---|
| Symbol | |
|---|
| ID | 6281200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 2417225 |
|---|
| End bp | 2418256 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642621698 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001895764 |
|---|
| Protein GI | 187924122 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAACTCG CCTTCAGTAA CGACCGTCTG TCCAGCCGCA TGCAGTTCGA TTCGTCCGCC
GCCGCTGAAC CCGAGGTGGA GTCGTCGGTG ATTGAATGGC TGTTGCACGA CGATCAGGTG
ATGCGCGAAT GCTTCACTCA CGCGGCGGAG ATTCTCAAGA GCGTGACCGG CGCGGCGATC
ACCGCGATCA CGCTGCTCGA CGAGGAGTAC CAGCATTATC GCGCCGAGGT CGGCATGGCG
ATGCCGCTCG TCACGCGGGC CCGTTCGCTC GCCGACTATG CGGTGCGCGA CGCGGAACTG
TTCGTGATCG AGGACGCGCA CGACGACACC CGTTTCGGCG AATGCATGCT CGTGCAGCGG
CATCCGTTCG TGCGTTTCTA CGCGGCCATC GCGCTGCGCG CGCCCAATGG CGAGATCGTC
GGCGCGTTGT GCGCGATGGA CCCGGCGCCC GGCCGACTCG ACGCGGGCCA GCGCGGCGTG
TTCTACCACC TGCGCGCGAT GATCGAGAAC GACCTGAAGA TGCGCACGGC CACCGCGATC
GATCCGCTGA CGCAGCTTTA CAACCGGCGT TTCCTGCTGG AGAGCATCGC GCGCCGCTGG
AAAGAGGCGC GGGACGGCGA CGTGATGGGA TCGGTCGTGG TCGACGTGGA CTGGTTCAAG
CAATACAACG ACACCTACGG CCACCAGGCG GGCGACCAGT GTCTGCGCAA GGTGGCCTCG
GTGATGCAGG CCGCGGCCGA TGGCGAACGC ATCATCGTCG GGCGCATGGG CGGCGAGGAG
TTCGGCCTGC TGGTGCTGCA CGCGGAGTAC GCGGCGCTCG AAGACACGCT CGACACGTTA
CGTCAGGGCG TGGCGGATCT GGCGATCGAA CATCGCGCGT CGCCGCTCGG CAGGGTGACG
GTGAGCGTGG GCGCGTCGTT GACGCGCATC AGCGAAACTT CCCGGCCGGC GCATCGCGAG
GGTTTCGCGA GCGCGGATCG CGCGCTGTAT CGATCGAAAC ATGGCGGTCG AAACCAGGTG
ACGATGGCGT AG
|
|---|
| Protein sequence | MQLAFSNDRL SSRMQFDSSA AAEPEVESSV IEWLLHDDQV MRECFTHAAE ILKSVTGAAI
TAITLLDEEY QHYRAEVGMA MPLVTRARSL ADYAVRDAEL FVIEDAHDDT RFGECMLVQR
HPFVRFYAAI ALRAPNGEIV GALCAMDPAP GRLDAGQRGV FYHLRAMIEN DLKMRTATAI
DPLTQLYNRR FLLESIARRW KEARDGDVMG SVVVDVDWFK QYNDTYGHQA GDQCLRKVAS
VMQAAADGER IIVGRMGGEE FGLLVLHAEY AALEDTLDTL RQGVADLAIE HRASPLGRVT
VSVGASLTRI SETSRPAHRE GFASADRALY RSKHGGRNQV TMA
|
|---|
| |