| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1578 |
|---|
| Symbol | |
|---|
| ID | 6281640 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 1779428 |
|---|
| End bp | 1780252 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642621142 |
|---|
| Product | transcriptional regulator, IclR family |
|---|
| Protein accession | YP_001895215 |
|---|
| Protein GI | 187923573 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1414] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.652169 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTCCC GAACCGCGGC AGACCCGGCA AGAGACAAAG ACGGCTCCGG CGACGAAGTG
ACCGCCCTCG CGCGCGGCCT GACCGTACTG CGCTCGGTCG CCGCCGCCGA CGCGCCGCTC
AGCAACCGCG AACTGACCGA GCTGACCGGC ATTCCCAAAC CCACCGTCTC GCGAATCACT
GCCACGCTGG TCAGCGCGGG TTTCCTGTTT CGCCTGCCCG ACAGCGAGCG GTTCGTGCTG
ACCTCGTCGG TGCTGGAGCT GAGCAACGGC TTCCTGCGCA ACTTCGACAT CCGTGCTCGC
GCGCGGCCAT TCCTGATCGA ACTGGCCGAA CGCACGGCGT TGTCCGTCCA TCTCGCCGTG
CGCGACCGCC TCGACATGGT GGTGATCGAC GCGATCCGCC CGCGTTCGGC GGTGCTGGTG
TCCCGTCTCG AGATCGGCTC GCGTATGAAT CTGAGCCGCA CCGCCATCGG CCGCGCCTAT
CTTGCCGCGC TCGAAGAGCC GGAGCGGGAA AAATTGCTGA TCGGCTTGCA GGCGGCTGAA
GGCGACGACT GGGGCCATGT CGGCAGCCGG CTCGACAACG CATTACAGGA AACCATCGAG
CGCGGCTTCG CGATCGCCAC GGGCGAATGG TACGACGGAC TCAACGCAAT CGCACTCGGT
TTCACGGGAC CGTCGGGCGA ACGCTACGCG GTCAATTGCG GCGGCTCAGC CGACCAGTGC
CCGCGCGACT GGCTGATCTC GCGCGCGGCG CCGGCGCTGC TCGAGTGCGT CGCCAGAATC
GTGCTGGAGA TCGGCGGCAC GCCGGGGCGC CGCCTCGATA CCTGA
|
|---|
| Protein sequence | MPSRTAADPA RDKDGSGDEV TALARGLTVL RSVAAADAPL SNRELTELTG IPKPTVSRIT
ATLVSAGFLF RLPDSERFVL TSSVLELSNG FLRNFDIRAR ARPFLIELAE RTALSVHLAV
RDRLDMVVID AIRPRSAVLV SRLEIGSRMN LSRTAIGRAY LAALEEPERE KLLIGLQAAE
GDDWGHVGSR LDNALQETIE RGFAIATGEW YDGLNAIALG FTGPSGERYA VNCGGSADQC
PRDWLISRAA PALLECVARI VLEIGGTPGR RLDT
|
|---|
| |